I'd like to rename the files with the unique sample name (which is the title of the subdirectory 2 levels above the files).
Here is a snippet of the directory structure:
|-RNAdata
| |-Sample1
| | |-cufflinks
| | | |-genes.fpkm_tracking
| | | |-skipped.gtf
| | | |-isoforms.fpkm_tracking
| | | |-transcripts.gtf
| |-Sample2
| | |-cufflinks
| | | |-genes.fpkm_tracking
| | | |-skipped.gtf
| | | |-isoforms.fpkm_tracking
| | | |-transcripts.gtf
There are about 1000 files like this. I'd like to be able to see something like this:
|-RNAdata
| |-Sample1_genes.fpkm_tracking
| |-Sample1_skipped.gtf
| |-Sample1_isoforms.fpkm_tracking
| |-Sample1_transcripts.gtf
| |-Sample2_genes.fpkm_tracking
| |-Sample2_skipped.gtf
| |-Sample2_isoforms.fpkm_tracking
| |-Sample2_transcripts.gtf
I'm working in a Linux environment and have very basic knowledge on file management with this language. Any advice/suggestions for resources on this type of work, that would be great! I'd like to learn this so I can be more independent with this. Thank you!
Related
Let's say we have 3 buffers (A, B, C) open in Vim arranged as follows
-----------------------------------------
| | |
| | |
| | |
| A | |
| | |
| | |
|------------------| B |
| | |
| | |
| C | |
| | |
| | |
-----------------------------------------
and we want to rearrange it as
-----------------------------------------
| | |
| | |
| | |
| | B |
| | |
| | |
| A |--------------------|
| | |
| | |
| | C |
| | |
| | |
-----------------------------------------
I know I can do this by closing C and reopening it after splitting B. Is there a simple way to do this where I don't have to close buffers and I can rearrange the windows directly?
You wouldn't "close" the buffer C, only the window that displays it.
Vim has dedicated normal mode commands for:
switching a window and the next one in a row or column,
rotating the whole window layout,
pushing a window to the far top, far right, far bottom, and far left,
but it doesn't have one for moving a window to an arbitrary point so, assuming the window you want to move has the focus, the command should look like this:
:q|winc w|sp c
which is not too shabby. You might be able to find a plugin that provides the level of control you are after on https://www.vim.org.
Alright, I'm back. This time I'm trying to quickly select all of the values in a range which match values in a separate list, my first iteration will be to clear the contents of voided IDs, my second iteration will be to select those values and then replace them with corresponding new values.
I asked another question about VBA and was pointed in mentioning that I've tried to teach myself and find resources to work through these issues before but people seem to get pissed that I'm asking, if you could at least direct me to somewhere that I can learn about these matters (or even a place I can learn basic logic and have a list of usable functions without having to go through all the "How to make your first Excel VBA for some problem that nobody cares about" I would appreciate it)
Anyway I tried to watch a few videos and then hack together something but it seems pretty clear that the function they were using cannot be adapted for other uses. This is what I have at the moment:
Sub FilterElim()
finalRow = Range("g2").End(xlDown).Row
Range("A1").ClearContents _
Action:= xlClearContents, _
CriteriaRange: Range("Sheet4!B1:B10"), _
Unique:= False
End Sub
So based on some helpful questions I am making an edit to include an example and desired end
Example set:
Desired end result:
I presume I may need to perform a selection of some sort based on the Criteria before the ClearContents but I wasn't finding anything helpful on how to go about that. PLEASE and thank you.
| Contractor ID | Cont Name | Proj 1 | Proj 2 | Proj 3 | | | Old ID | Reconciliation |
|-----------------|-------------------|--------|--------|--------|---|---|--------|----------------|
| C1001 | Boba Fet | P1120 | | | | | P1001 | Void |
| C1003 | Jules Winnfield | P1031 | P1045 | | | | P1002 | P1010 |
| C1002 | Dom Cobb | P1001 | | | | | P1005 | Void |
| C1010 | Patrick Verona | P1020 | P1224 | P1251 | | | P1020 | Void |
| C1007 | Matt Damon | P1008 | P1005 | P1300 | | | P1045 | P1100 |
| C1004 | Ned Plimpton | P1002 | | | | | P1224 | P1300 |
| C1020 | Derek Zoolander | P1020 | P1290 | | | | | |
| C1009 | Charles Marlow | P1002 | P0090 | | | | | |
| C1011 | Robert Jordan | P1119 | | | | | | |
| C1015 | Perrin Aybara | P1200 | P1224 | | | | | |
| C1005 | Fuzzy Dunlop | P1005 | | | | | | |
| C1008 | Thomas A Anderson | P1001 | P1000 | | | | | |
| | | | | | | | | |
What makes you go for a VBA solution ?
Hard to do much without a glance of you data and expected result.
Non VBA option:
=IFERROR(INDEX($G$2:$G$15,MATCH(A32,$F$2:$F$15,0)),B32)
For a VBA option, you can try:
Option Explicit
Sub update_id()
Dim D1 As Object: Set D1 = CreateObject("scripting.dictionary")
Dim R1 As Range: Set R1 = Range("A2:A32")
Dim R2 As Range: Set R2 = Range("E2:E15")
Dim Rtmp As Range
For Each Rtmp In R2
D1(Rtmp.Value) = Rtmp.Offset(0, 1).Value
Next Rtmp
For Each Rtmp In R1
If D1.exists(Rtmp.Value) Then Rtmp.Offset(0, 1) = D1(Rtmp.Value)
Next Rtmp
End Sub
Working on the following set up :
Again, without a better understanding of your data and your issue, its hard to be more precise.
The following example just shows the pattern, my data much bigger.
I have a Table like
| Variable | String |
|:---------|-------:|
| V1 | Hello |
| V2 | little |
| V3 | World |
I have another table where different arrangements are defined
| Arrangement1 | Arrangement2 |
|:-------------|-------------:|
| V3 | V2 |
| V2 | V1 |
| V1 | V3 |
My output depending on the asked Arrangement (e.g. Arrangement1) should be
| Variable | Value |
|:---------|------:|
| V3 | World |
| V2 | little|
| V1 | Hello |
Till now I try to realize an approach with .find and array but think there might be an easier way (maybe with dictionary?) anyone an idea with good performance?
Let say we have a directory structure like:
A
|---B
| |---C
| | |--f1.txt
| |
| |---D
| | |--f2.txt
|
|---E
| |---f3.txt
| |
|
|---F
| |---f4.txt
Now how to zip a file BE.zip excluding F directory, i.e when I unzip BE.zip the result should be:
|---B
| |---C
| | |--f1.txt
| |
| |---D
| | |--f2.txt
|
|---E
| |---f3.txt
ok got it..
zip -r BE.zip B/ E/
you can u this for recursive
zip BE.zip B/* E/*
I usually have my Vim screen split into two vertical windows, each of which may be further horizontally split. Sometimes, I want to add or delete a vertical window. Is there a way to detect how many top-level vertical splits there are and add or remove vsplits as necessary?
For example, suppose my screen looks like this:
+--------+--------+
| | |
| | |
+--------+ |
| | |
| | |
| +--------+
| | |
+--------+--------+
I want :Columns 1 to give me
+--------+
| |
| |
+--------+
| |
| |
| |
| |
+--------+
by closing the two right-most windows.
I want :Columns 2 to do nothing, detecting that two columns are already open.
And I want :Columns 3 to give me
+--------+--------+--------+
| | | |
| | | |
+--------+ | |
| | | |
| | | |
| +--------+ |
| | | |
+--------+--------+--------+
I am fine if the function ignores vertical splits within horizontal splits. For example, if I had
+--------+
| |
| |
+---+----+
| | |
| | |
| | |
| | |
+---+----+
and I ran :Columns 2, I would get
+--------+--------+
| | |
| | |
+---+----+ |
| | | |
| | | |
| | | |
| | | |
+---+----+--------+
There is indeed a way, but it is involved; the first step is to count the currently-open vertical windows, and I don’t know of any built-in function that facilitates this. The working approach I found to it is basically to start at the first window (the top of the first — if not the entirety of the first — vertical split), and to then, using wincmd l, move to the next window to the right for as long as wincmd l moves to a new window, adding each to a count of open vertical windows including the first one. (I think this is what Gary Fixler referred to in the comments on the question.)
I started trying to write the code for posting here, and it grew to become larger than any function I would want to put in my ~/.vimrc, so I ended up turning it into a plugin which takes the above approach and provides the :Columns command; see Columcille (on vim.org at http://www.vim.org/scripts/script.php?script_id=4742.) The plugin also provides a command for similarly managing horizontal split windows: :Rows divides the current column (or the main window, if there are no open vertical splits) into the specified number of “rows.”