How do I change the size of my image so it's suitable for printing?
For example, I'd like to use to A4 paper, whose dimensions are 11.7 inches by 8.27 inches in landscape orientation.
You can also set figure size by passing dictionary to rc parameter with key 'figure.figsize' in seaborn set method:
import seaborn as sns
sns.set(rc={'figure.figsize':(11.7,8.27)})
Other alternative may be to use figure.figsize of rcParams to set figure size as below:
from matplotlib import rcParams
# figure size in inches
rcParams['figure.figsize'] = 11.7,8.27
More details can be found in matplotlib documentation
You need to create the matplotlib Figure and Axes objects ahead of time, specifying how big the figure is:
from matplotlib import pyplot
import seaborn
import mylib
a4_dims = (11.7, 8.27)
df = mylib.load_data()
fig, ax = pyplot.subplots(figsize=a4_dims)
seaborn.violinplot(ax=ax, data=df, **violin_options)
Note that if you are trying to pass to a "figure level" method in seaborn (for example lmplot, catplot / factorplot, jointplot) you can and should specify this within the arguments using height and aspect.
sns.catplot(data=df, x='xvar', y='yvar',
hue='hue_bar', height=8.27, aspect=11.7/8.27)
See https://github.com/mwaskom/seaborn/issues/488 and Plotting with seaborn using the matplotlib object-oriented interface for more details on the fact that figure level methods do not obey axes specifications.
first import matplotlib and use it to set the size of the figure
from matplotlib import pyplot as plt
import seaborn as sns
plt.figure(figsize=(15,8))
ax = sns.barplot(x="Word", y="Frequency", data=boxdata)
You can set the context to be poster or manually set fig_size.
import numpy as np
import seaborn as sns
import matplotlib.pyplot as plt
np.random.seed(0)
n, p = 40, 8
d = np.random.normal(0, 2, (n, p))
d += np.log(np.arange(1, p + 1)) * -5 + 10
# plot
sns.set_style('ticks')
fig, ax = plt.subplots()
# the size of A4 paper
fig.set_size_inches(11.7, 8.27)
sns.violinplot(data=d, inner="points", ax=ax)
sns.despine()
fig.savefig('example.png')
This can be done using:
plt.figure(figsize=(15,8))
sns.kdeplot(data,shade=True)
In addition to elz answer regarding "figure level" methods that return multi-plot grid objects it is possible to set the figure height and width explicitly (that is without using aspect ratio) using the following approach:
import seaborn as sns
g = sns.catplot(data=df, x='xvar', y='yvar', hue='hue_bar')
g.fig.set_figwidth(8.27)
g.fig.set_figheight(11.7)
This shall also work.
from matplotlib import pyplot as plt
import seaborn as sns
plt.figure(figsize=(15,16))
sns.countplot(data=yourdata, ...)
For my plot (a sns factorplot) the proposed answer didn't works fine.
Thus I use
plt.gcf().set_size_inches(11.7, 8.27)
Just after the plot with seaborn (so no need to pass an ax to seaborn or to change the rc settings).
See How to change the image size for seaborn.objects for a solution with the new seaborn.objects interface from seaborn v0.12, which is not the same as seaborn axes-level or figure-level plots.
Adjusting the size of the plot depends if the plot is a figure-level plot like seaborn.displot, or an axes-level plot like seaborn.histplot. This answer applies to any figure or axes level plots.
See the the seaborn API reference
seaborn is a high-level API for matplotlib, so seaborn works with matplotlib methods
Tested in python 3.8.12, matplotlib 3.4.3, seaborn 0.11.2
Imports and Data
import seaborn as sns
import matplotlib.pyplot as plt
# load data
df = sns.load_dataset('penguins')
sns.displot
The size of a figure-level plot can be adjusted with the height and/or aspect parameters
Additionally, the dpi of the figure can be set by accessing the fig object and using .set_dpi()
p = sns.displot(data=df, x='flipper_length_mm', stat='density', height=4, aspect=1.5)
p.fig.set_dpi(100)
Without p.fig.set_dpi(100)
With p.fig.set_dpi(100)
sns.histplot
The size of an axes-level plot can be adjusted with figsize and/or dpi
# create figure and axes
fig, ax = plt.subplots(figsize=(6, 5), dpi=100)
# plot to the existing fig, by using ax=ax
p = sns.histplot(data=df, x='flipper_length_mm', stat='density', ax=ax)
Without dpi=100
With dpi=100
# Sets the figure size temporarily but has to be set again the next plot
plt.figure(figsize=(18,18))
sns.barplot(x=housing.ocean_proximity, y=housing.median_house_value)
plt.show()
Some tried out ways:
import seaborn as sns
import matplotlib.pyplot as plt
ax, fig = plt.subplots(figsize=[15,7])
sns.boxplot(x="feature1", y="feature2",data=df) # where df would be your dataframe
or
import seaborn as sns
import matplotlib.pyplot as plt
plt.figure(figsize=[15,7])
sns.boxplot(x="feature1", y="feature2",data=df) # where df would be your dataframe
The top answers by Paul H and J. Li do not work for all types of seaborn figures. For the FacetGrid type (for instance sns.lmplot()), use the size and aspect parameter.
Size changes both the height and width, maintaining the aspect ratio.
Aspect only changes the width, keeping the height constant.
You can always get your desired size by playing with these two parameters.
Credit: https://stackoverflow.com/a/28765059/3901029
Related
I'm trying to define a colorbar for the following type of plot.
import matplotlib.pyplot as plt
import numpy as np
for i in np.arange(0,10,0.1):
plt.plot(range(10),np.ones(10)*i,c=[i/10.,0.5,0.25])
plt.show()
This is just a simplified version of my actual data, but basically, I'd like a series of lines plotted and colored by another variable with a colorbar key. This is easy to do in scatter, but I can't get scatter to plot connected lines. Points are too clunky. I know this sounds like basic stuff, but I'm having a helluva time finding a simple solution ... what obvious solution am I missing?
You can build a custom color map and a mappable from it, then pass to colorbar:
from matplotlib.cm import ScalarMappable
from matplotlib.colors import Normalize
import matplotlib.colors as mcolors
color_list = [(i/10, 0.5,0.25) for i in np.arange(0,10,0.1)]
cmap = mcolors.LinearSegmentedColormap.from_list("my_colormap", color_list)
cmappable = ScalarMappable(norm=Normalize(0,10), cmap=cmap)
plt.figure(figsize=(10,10))
for j,i in enumerate(np.arange(0,10,0.1)):
plt.plot(range(10),np.ones(10)*i,c=color_list[j])
plt.colorbar(cmappable)
plt.show()
Output:
I created a heatmap using matplotlib and seaborn, It looks ok.
But my question is how to add values on heatmap. My current heatmap contains only different colors.
import matplotlib.pyplot as plt
import pandas as pd
import seaborn as sns
data = pd.DataFrame(data={'x':index, 'y':colonnes, 'z':score})
data = data.pivot(index='x', columns='y', values='z')
sns.heatmap(data)
plt.show()
Any idea please?
Thanks
sns.heatmap(data, annot=True)
From documentation:
annot : bool or rectangular dataset, optional. If True, write the data value in each cell. If an array-like with the same shape as data, then use this to annotate the heatmap instead of the raw data.
Also, play around with fmt and annot_kws paramaters.
So I was trying to map out some math functions in 3d using matplotlib when I noticed something... The 3d plot suddenly changed (more like broke) when I tried to fix a previous issue wherein I was encountering some 'missing surface' - a gap in the plot. The main question is this -- Is the 3d plot not showing the two peaks on higher precision due to some inherent computing limitations of Axes3d or some other reason? Also a secondary question -- Why am I encountering 'missing surfaces' near +1.25 and -1.25 in lower precision plot?
I have tried googling for it and referred a few posts but nothing came ot except more questions.
import numpy as np
import matplotlib as mpl
import matplotlib.pyplot as plt
from matplotlib import cm
from mpl_toolkits.mplot3d import Axes3D
X=np.arange(-2,+2,0.025)
## Use np.arange(-5,+5,0.25) to experience the 'surface loss' I mention but otherwise correct 2 spike plot at each of (0,-1) and (0,+1) for both X and Y
Y=np.arange(-2,+2,0.025)
X,Y=np.meshgrid(X,Y)
R=1+X**2-Y**2
S=R**2+4*(X**2)*(Y**2)
Z=R/S
fig=plt.figure()
ax=Axes3D(fig)
ax.plot_surface(X,Y,Z,rstride=1,cstride=1,cmap=cm.viridis,norm=mpl.colors.Normalize(vmin=-1.,vmax=1.))
##NORMALIZE Was essential to get the proper color range
plt.show()
plt.savefig('art3d.jpeg',bbox_inches='tight')
plt.savefig('art3d.svg',bbox_inches='tight')
The ideal result should be like this (shows the func and the plot)
https://i.stack.imgur.com/kVnYc.png
The two plots I'm getting could be seen when the code is run as I can't seem to add images presumably because of low reputation :(
Any and all help is appreciated.Thanks in advance.
First note that the function in use is different from the wolfram alpha output. So let's use the function shown in the screenshot. Then you can limit the data to the range you want to show.
import numpy as np
import matplotlib as mpl
import matplotlib.pyplot as plt
from matplotlib import cm
from mpl_toolkits.mplot3d import Axes3D
X = np.arange(-2,+2,0.025)
Y=np.arange(-2,+2,0.025)
X,Y=np.meshgrid(X,Y)
Z = -2*X*Y / ((2*X*Y)**2 + (X**2 - Y**2 + 1)**2)
Z[(Z < -1)] = -1
Z[(Z > 1)] = 1
fig=plt.figure()
ax=Axes3D(fig)
ax.plot_surface(X,Y,Z,rstride=1,cstride=1,cmap=cm.viridis,norm=mpl.colors.Normalize(vmin=-1.,vmax=1.))
plt.show()
My plot is not showing any indication of what the order of magnitude of my y-values are on the axis. How do I force python to indicate some values on the y-axis?
import numpy as np
import matplotlib.pyplot as plt
BERfinal = [0.4967843137254903, 0.49215686274509757, 0.4938823529411763,
0.49170588235294116, 0.48852941176470605, 0.48203921568627417,
0.4797058823529405, 0.47454901960784257, 0.4795686274509802,
0.474901960784313, 0.4732549019607838, 0.4703137254901953,
0.4705490196078425]
x = np.linspace(-4,8,len(BERfinal))
plt.semilogy(x,BERfinal)
plt.title("BER vs SNR")
plt.ylabel("Bit Error Rate(BER)")
plt.xlabel("Signal-to-Noise Ratio(SNR)[dB]")
plt.xlim(-4,8)
I ended up playing around with:
plt.ylim(4.7*10**-1, 5*10**-1)
and changed the values until I found an appropriate range. It now shows 5x10^-1 on the y-axis.
I have made a plot in jupyter that has an x-axis spanning for about 40 seconds. I want to pull out sections that are milliseconds long and re-display them as separate plots (so that they can be better viewed). How would I go about doing this?
You could use some subplots, and slice the original data arrays. For example:
import matplotlib.pyplot as plt
import numpy as np
x = np.linspace(0,40,1000)
y = np.random.random(1000)
fig, [ax1,ax2,ax3] = plt.subplots(3,1)
ax1.plot(x,y)
ax2.plot(x[100:120],y[100:120])
ax3.plot(x[500:520],y[500:520])
plt.show()