I created a heatmap using matplotlib and seaborn, It looks ok.
But my question is how to add values on heatmap. My current heatmap contains only different colors.
import matplotlib.pyplot as plt
import pandas as pd
import seaborn as sns
data = pd.DataFrame(data={'x':index, 'y':colonnes, 'z':score})
data = data.pivot(index='x', columns='y', values='z')
sns.heatmap(data)
plt.show()
Any idea please?
Thanks
sns.heatmap(data, annot=True)
From documentation:
annot : bool or rectangular dataset, optional. If True, write the data value in each cell. If an array-like with the same shape as data, then use this to annotate the heatmap instead of the raw data.
Also, play around with fmt and annot_kws paramaters.
Related
I am trying to draw the Nyquist plot using python but I have no clue what all parameters are required by python to do plot that curve.
Here is a glimpse of the parameters that I have:
Channel_ID,Step_ID,Cycle_ID,Test_Time,EIS_Test_ID,EIS_Data_Point,Frequency,Zmod,Zphz,Zreal,Zimg,OCV,AC_Amp_RMS
4,7,1,36966.3072,0,0,200015.6,0.4933,70.9969,0.1606,0.4664,3.6231,0.35
4,7,1,36966.3072,0,1,158953.1,0.412,70.8901,0.1349,0.3893,3.6231,0.35
4,7,1,36966.3072,0,2,126234.4,0.3437,70.7115,0.1135,0.3244,3.6231,0.35
4,7,1,36966.3072,0,3,100265.6,0.2869,70.6312,0.0951,0.2706,3.6231,0.35
4,7,1,36966.3072,0,4,79640.63,0.2364,70.2418,0.0799,0.2224,3.6231,0.35
and above are the values to those parameters.
Based on the above parameters that are
Test_Time, Frequency, Zmod, Zphz, Zreal, Zimg, OCV, AC_Amp_RMS where Zmod is the absolute value of Zreal and Zimg, I need to draw a Nyquist plot. I have no clue how these parameters could be used for the plot.
PS: I tried to plot the curve by making use of the real and imaginary part that is Zimg and Zreal
import pandas as pd
import numpy as np
import matplotlib.pyplot as plt
train_df = pd.read_csv("above_data_with_around_100_rows.csv")
plt.figure()
plt.plot(train_df["Zreal"], train_df["Zimg"], "b")
plt.plot(train_df["Zreal"], -train_df["Zimg"], "r")
plt.show()
Can this be the useful for Nyquist plot?
I'm trying to define a colorbar for the following type of plot.
import matplotlib.pyplot as plt
import numpy as np
for i in np.arange(0,10,0.1):
plt.plot(range(10),np.ones(10)*i,c=[i/10.,0.5,0.25])
plt.show()
This is just a simplified version of my actual data, but basically, I'd like a series of lines plotted and colored by another variable with a colorbar key. This is easy to do in scatter, but I can't get scatter to plot connected lines. Points are too clunky. I know this sounds like basic stuff, but I'm having a helluva time finding a simple solution ... what obvious solution am I missing?
You can build a custom color map and a mappable from it, then pass to colorbar:
from matplotlib.cm import ScalarMappable
from matplotlib.colors import Normalize
import matplotlib.colors as mcolors
color_list = [(i/10, 0.5,0.25) for i in np.arange(0,10,0.1)]
cmap = mcolors.LinearSegmentedColormap.from_list("my_colormap", color_list)
cmappable = ScalarMappable(norm=Normalize(0,10), cmap=cmap)
plt.figure(figsize=(10,10))
for j,i in enumerate(np.arange(0,10,0.1)):
plt.plot(range(10),np.ones(10)*i,c=color_list[j])
plt.colorbar(cmappable)
plt.show()
Output:
I try to draw displot with seaborn with this code:
import pandas as pd
import seaborn as sns
trips = pd.read_csv('tripdata_2019-05.csv')
sns.displot(trips, x='week_day')
and as result get this plot:
But if I save plot to the file and view it on the markdown in this way:
sns.displot(trips, x='week_day')
plt.savefig("graphics/week_day")
plt.close()
markdown cell:
I get this correct plot:
So what the problem?
This looks like an aliasing problem with the image. I don't know why the bars are so thin, they are not like that on my computer.
Maybe try to increase the size of the FacetGrid figure?
sns.displot(trips, x='week_day', height=6)
You could also increase the resolution by adding
plt.rcParams['figure.dpi'] = 300
just before sns.displot()
How do I change the size of my image so it's suitable for printing?
For example, I'd like to use to A4 paper, whose dimensions are 11.7 inches by 8.27 inches in landscape orientation.
You can also set figure size by passing dictionary to rc parameter with key 'figure.figsize' in seaborn set method:
import seaborn as sns
sns.set(rc={'figure.figsize':(11.7,8.27)})
Other alternative may be to use figure.figsize of rcParams to set figure size as below:
from matplotlib import rcParams
# figure size in inches
rcParams['figure.figsize'] = 11.7,8.27
More details can be found in matplotlib documentation
You need to create the matplotlib Figure and Axes objects ahead of time, specifying how big the figure is:
from matplotlib import pyplot
import seaborn
import mylib
a4_dims = (11.7, 8.27)
df = mylib.load_data()
fig, ax = pyplot.subplots(figsize=a4_dims)
seaborn.violinplot(ax=ax, data=df, **violin_options)
Note that if you are trying to pass to a "figure level" method in seaborn (for example lmplot, catplot / factorplot, jointplot) you can and should specify this within the arguments using height and aspect.
sns.catplot(data=df, x='xvar', y='yvar',
hue='hue_bar', height=8.27, aspect=11.7/8.27)
See https://github.com/mwaskom/seaborn/issues/488 and Plotting with seaborn using the matplotlib object-oriented interface for more details on the fact that figure level methods do not obey axes specifications.
first import matplotlib and use it to set the size of the figure
from matplotlib import pyplot as plt
import seaborn as sns
plt.figure(figsize=(15,8))
ax = sns.barplot(x="Word", y="Frequency", data=boxdata)
You can set the context to be poster or manually set fig_size.
import numpy as np
import seaborn as sns
import matplotlib.pyplot as plt
np.random.seed(0)
n, p = 40, 8
d = np.random.normal(0, 2, (n, p))
d += np.log(np.arange(1, p + 1)) * -5 + 10
# plot
sns.set_style('ticks')
fig, ax = plt.subplots()
# the size of A4 paper
fig.set_size_inches(11.7, 8.27)
sns.violinplot(data=d, inner="points", ax=ax)
sns.despine()
fig.savefig('example.png')
This can be done using:
plt.figure(figsize=(15,8))
sns.kdeplot(data,shade=True)
In addition to elz answer regarding "figure level" methods that return multi-plot grid objects it is possible to set the figure height and width explicitly (that is without using aspect ratio) using the following approach:
import seaborn as sns
g = sns.catplot(data=df, x='xvar', y='yvar', hue='hue_bar')
g.fig.set_figwidth(8.27)
g.fig.set_figheight(11.7)
This shall also work.
from matplotlib import pyplot as plt
import seaborn as sns
plt.figure(figsize=(15,16))
sns.countplot(data=yourdata, ...)
For my plot (a sns factorplot) the proposed answer didn't works fine.
Thus I use
plt.gcf().set_size_inches(11.7, 8.27)
Just after the plot with seaborn (so no need to pass an ax to seaborn or to change the rc settings).
See How to change the image size for seaborn.objects for a solution with the new seaborn.objects interface from seaborn v0.12, which is not the same as seaborn axes-level or figure-level plots.
Adjusting the size of the plot depends if the plot is a figure-level plot like seaborn.displot, or an axes-level plot like seaborn.histplot. This answer applies to any figure or axes level plots.
See the the seaborn API reference
seaborn is a high-level API for matplotlib, so seaborn works with matplotlib methods
Tested in python 3.8.12, matplotlib 3.4.3, seaborn 0.11.2
Imports and Data
import seaborn as sns
import matplotlib.pyplot as plt
# load data
df = sns.load_dataset('penguins')
sns.displot
The size of a figure-level plot can be adjusted with the height and/or aspect parameters
Additionally, the dpi of the figure can be set by accessing the fig object and using .set_dpi()
p = sns.displot(data=df, x='flipper_length_mm', stat='density', height=4, aspect=1.5)
p.fig.set_dpi(100)
Without p.fig.set_dpi(100)
With p.fig.set_dpi(100)
sns.histplot
The size of an axes-level plot can be adjusted with figsize and/or dpi
# create figure and axes
fig, ax = plt.subplots(figsize=(6, 5), dpi=100)
# plot to the existing fig, by using ax=ax
p = sns.histplot(data=df, x='flipper_length_mm', stat='density', ax=ax)
Without dpi=100
With dpi=100
# Sets the figure size temporarily but has to be set again the next plot
plt.figure(figsize=(18,18))
sns.barplot(x=housing.ocean_proximity, y=housing.median_house_value)
plt.show()
Some tried out ways:
import seaborn as sns
import matplotlib.pyplot as plt
ax, fig = plt.subplots(figsize=[15,7])
sns.boxplot(x="feature1", y="feature2",data=df) # where df would be your dataframe
or
import seaborn as sns
import matplotlib.pyplot as plt
plt.figure(figsize=[15,7])
sns.boxplot(x="feature1", y="feature2",data=df) # where df would be your dataframe
The top answers by Paul H and J. Li do not work for all types of seaborn figures. For the FacetGrid type (for instance sns.lmplot()), use the size and aspect parameter.
Size changes both the height and width, maintaining the aspect ratio.
Aspect only changes the width, keeping the height constant.
You can always get your desired size by playing with these two parameters.
Credit: https://stackoverflow.com/a/28765059/3901029
My plot is not showing any indication of what the order of magnitude of my y-values are on the axis. How do I force python to indicate some values on the y-axis?
import numpy as np
import matplotlib.pyplot as plt
BERfinal = [0.4967843137254903, 0.49215686274509757, 0.4938823529411763,
0.49170588235294116, 0.48852941176470605, 0.48203921568627417,
0.4797058823529405, 0.47454901960784257, 0.4795686274509802,
0.474901960784313, 0.4732549019607838, 0.4703137254901953,
0.4705490196078425]
x = np.linspace(-4,8,len(BERfinal))
plt.semilogy(x,BERfinal)
plt.title("BER vs SNR")
plt.ylabel("Bit Error Rate(BER)")
plt.xlabel("Signal-to-Noise Ratio(SNR)[dB]")
plt.xlim(-4,8)
I ended up playing around with:
plt.ylim(4.7*10**-1, 5*10**-1)
and changed the values until I found an appropriate range. It now shows 5x10^-1 on the y-axis.