I am learning to code with PySpark and Jupyter-notebook with Python.
In the first example I got an error that I didn't understand.
I have installed Java in the folder C:\ProgramFiles\Java\jdk1.8.0_201. Since I read that Java may produce problem if its installation folder name has spaces, I installed over in the folder mentioned above. The version of Java is 8.
I installed Spark according to: https://mas-dse.github.io/DSE230/installation/windows/#install and configured the different variables https://jaceklaskowski.gitbooks.io/mastering-apache-spark/spark-tips-and-tricks-running-spark-windows.html
import findspark
findspark.init()
from pyspark import SparkContext
sc = SparkContext(master="local[4]")
A=sc.parallelize(range(3))
L=A.collect()
When the collect() command runs, I get the following errors
Py4JJavaError Traceback (most recent call last)
<ipython-input-5-6b63599b99af> in <module>()
----> 1 L=A.collect()
2 #print(type(L))
3 #print(L)
C:\opt\spark\python\pyspark\rdd.py in collect(self)
814 """
815 with SCCallSiteSync(self.context) as css:
--> 816 sock_info = self.ctx._jvm.PythonRDD.collectAndServe(self._jrdd.rdd())
817 return list(_load_from_socket(sock_info, self._jrdd_deserializer))
818
C:\opt\spark\python\lib\py4j-0.10.7-src.zip\py4j\java_gateway.py in __call__(self, *args)
1255 answer = self.gateway_client.send_command(command)
1256 return_value = get_return_value(
-> 1257 answer, self.gateway_client, self.target_id, self.name)
1258
1259 for temp_arg in temp_args:
C:\opt\spark\python\lib\py4j-0.10.7-src.zip\py4j\protocol.py in get_return_value(answer, gateway_client, target_id, name)
326 raise Py4JJavaError(
327 "An error occurred while calling {0}{1}{2}.\n".
--> 328 format(target_id, ".", name), value)
329 else:
330 raise Py4JError(
Py4JJavaError: An error occurred while calling z:org.apache.spark.api.python.PythonRDD.collectAndServe.
: org.apache.spark.SparkException: Job aborted due to stage failure: Task 3 in stage 0.0 failed 1 times, most recent failure: Lost task 3.0 in stage 0.0 (TID 3, localhost, executor driver): org.apache.spark.SparkException: Python worker failed to connect back.
at org.apache.spark.api.python.PythonWorkerFactory.createSimpleWorker(PythonWorkerFactory.scala:170)
at org.apache.spark.api.python.PythonWorkerFactory.create(PythonWorkerFactory.scala:97)
at org.apache.spark.SparkEnv.createPythonWorker(SparkEnv.scala:117)
at org.apache.spark.api.python.BasePythonRunner.compute(PythonRunner.scala:108)
at org.apache.spark.api.python.PythonRDD.compute(PythonRDD.scala:65)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
at org.apache.spark.scheduler.Task.run(Task.scala:121)
at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:402)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:408)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.net.SocketTimeoutException: Accept timed out
at java.net.DualStackPlainSocketImpl.waitForNewConnection(Native Method)
at java.net.DualStackPlainSocketImpl.socketAccept(DualStackPlainSocketImpl.java:135)
at java.net.AbstractPlainSocketImpl.accept(AbstractPlainSocketImpl.java:409)
at java.net.PlainSocketImpl.accept(PlainSocketImpl.java:199)
at java.net.ServerSocket.implAccept(ServerSocket.java:545)
at java.net.ServerSocket.accept(ServerSocket.java:513)
at org.apache.spark.api.python.PythonWorkerFactory.createSimpleWorker(PythonWorkerFactory.scala:164)
... 14 more
Driver stacktrace:
at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1887)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1875)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1874)
at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)
at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1874)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:926)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:926)
at scala.Option.foreach(Option.scala:257)
at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:926)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:2108)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2057)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2046)
at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:49)
at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:737)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2061)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2082)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2101)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2126)
at org.apache.spark.rdd.RDD$$anonfun$collect$1.apply(RDD.scala:945)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112)
at org.apache.spark.rdd.RDD.withScope(RDD.scala:363)
at org.apache.spark.rdd.RDD.collect(RDD.scala:944)
at org.apache.spark.api.python.PythonRDD$.collectAndServe(PythonRDD.scala:166)
at org.apache.spark.api.python.PythonRDD.collectAndServe(PythonRDD.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:244)
at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357)
at py4j.Gateway.invoke(Gateway.java:282)
at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:132)
at py4j.commands.CallCommand.execute(CallCommand.java:79)
at py4j.GatewayConnection.run(GatewayConnection.java:238)
at java.lang.Thread.run(Thread.java:748)
Caused by: org.apache.spark.SparkException: Python worker failed to connect back.
at org.apache.spark.api.python.PythonWorkerFactory.createSimpleWorker(PythonWorkerFactory.scala:170)
at org.apache.spark.api.python.PythonWorkerFactory.create(PythonWorkerFactory.scala:97)
at org.apache.spark.SparkEnv.createPythonWorker(SparkEnv.scala:117)
at org.apache.spark.api.python.BasePythonRunner.compute(PythonRunner.scala:108)
at org.apache.spark.api.python.PythonRDD.compute(PythonRDD.scala:65)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
at org.apache.spark.scheduler.Task.run(Task.scala:121)
at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:402)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:408)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
... 1 more
Caused by: java.net.SocketTimeoutException: Accept timed out
at java.net.DualStackPlainSocketImpl.waitForNewConnection(Native Method)
at java.net.DualStackPlainSocketImpl.socketAccept(DualStackPlainSocketImpl.java:135)
at java.net.AbstractPlainSocketImpl.accept(AbstractPlainSocketImpl.java:409)
at java.net.PlainSocketImpl.accept(PlainSocketImpl.java:199)
at java.net.ServerSocket.implAccept(ServerSocket.java:545)
at java.net.ServerSocket.accept(ServerSocket.java:513)
at org.apache.spark.api.python.PythonWorkerFactory.createSimpleWorker(PythonWorkerFactory.scala:164)
... 14 more
After several days looking for a solution to my problem, I found a recommendation in internet to install the previous version of Spark (2.3 instead of 2.4).
I tested it in my computer with windows 10 64bit system, and this worked for me to solve the problem above mentioned.
If you want more details, look at Python worker failed to connect back
Regards,
Diego
Related
Pyspark Version: 2.4.5
Hive Version: 1.2
Hadoop Version: 2.7
AWS-SDK Jar: 1.7.4
Hadoop-AWS: 2.7.3
When I am trying to show data I am getting Class org.apache.hadoop.fs.s3a.S3AFileSystem not found while I am passing all the information which all are required.
I passed all three for this config fs.s3.aws.credentials.provider
org.apache.hadoop.fs.s3a.BasicAWSCredentialsProvider
com.amazonaws.auth.InstanceProfileCredentialsProvider
com.amazonaws.auth.EnvironmentVariableCredentialsProvider
But nothing worked
Sample Code:
from pyspark.sql import SparkSession
sc = SparkSession.builder.getOrCreate()
sc._jsc.hadoopConfiguration().set("fs.s3a.impl","org.apache.hadoop.fs.s3a.S3AFileSystem")
sc._jsc.hadoopConfiguration().set('fs.s3.aws.credentials.provider', 'com.amazonaws.auth.EnvironmentVariableCredentialsProvider')
val = sc.sql("select * from customer.100_rating limit 5")
val.show()
Error:
---------------------------------------------------------------------------
Py4JJavaError Traceback (most recent call last)
<ipython-input-11-e244f76da033> in <module>
----> 1 val.show()
/usr/local/spark/python/pyspark/sql/dataframe.py in show(self, n, truncate, vertical)
378 """
379 if isinstance(truncate, bool) and truncate:
--> 380 print(self._jdf.showString(n, 20, vertical))
381 else:
382 print(self._jdf.showString(n, int(truncate), vertical))
/usr/local/spark/python/lib/py4j-0.10.7-src.zip/py4j/java_gateway.py in __call__(self, *args)
1255 answer = self.gateway_client.send_command(command)
1256 return_value = get_return_value(
-> 1257 answer, self.gateway_client, self.target_id, self.name)
1258
1259 for temp_arg in temp_args:
/usr/local/spark/python/pyspark/sql/utils.py in deco(*a, **kw)
61 def deco(*a, **kw):
62 try:
---> 63 return f(*a, **kw)
64 except py4j.protocol.Py4JJavaError as e:
65 s = e.java_exception.toString()
/usr/local/spark/python/lib/py4j-0.10.7-src.zip/py4j/protocol.py in get_return_value(answer, gateway_client, target_id, name)
326 raise Py4JJavaError(
327 "An error occurred while calling {0}{1}{2}.\n".
--> 328 format(target_id, ".", name), value)
329 else:
330 raise Py4JError(
**Py4JJavaError: An error occurred while calling o194.showString.
: org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 0.0 failed 4 times, most recent failure: Lost task 0.3 in stage 0.0 (TID 6, 10.101.101.238, executor 2): java.lang.RuntimeException: java.lang.ClassNotFoundException: Class org.apache.hadoop.fs.s3a.S3AFileSystem not found**
at org.apache.hadoop.conf.Configuration.getClass(Configuration.java:2195)
at org.apache.hadoop.fs.FileSystem.getFileSystemClass(FileSystem.java:2654)
at org.apache.hadoop.fs.FileSystem.createFileSystem(FileSystem.java:2667)
at org.apache.hadoop.fs.FileSystem.access$200(FileSystem.java:94)
at org.apache.hadoop.fs.FileSystem$Cache.getInternal(FileSystem.java:2703)
at org.apache.hadoop.fs.FileSystem$Cache.get(FileSystem.java:2685)
at org.apache.hadoop.fs.FileSystem.get(FileSystem.java:373)
at org.apache.hadoop.fs.Path.getFileSystem(Path.java:295)
at org.apache.hadoop.mapred.LineRecordReader.<init>(LineRecordReader.java:108)
at org.apache.hadoop.mapred.TextInputFormat.getRecordReader(TextInputFormat.java:67)
at org.apache.spark.rdd.HadoopRDD$$anon$1.liftedTree1$1(HadoopRDD.scala:267)
at org.apache.spark.rdd.HadoopRDD$$anon$1.<init>(HadoopRDD.scala:266)
at org.apache.spark.rdd.HadoopRDD.compute(HadoopRDD.scala:224)
at org.apache.spark.rdd.HadoopRDD.compute(HadoopRDD.scala:95)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:99)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:55)
at org.apache.spark.scheduler.Task.run(Task.scala:123)
at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:750)
Caused by: java.lang.ClassNotFoundException: Class org.apache.hadoop.fs.s3a.S3AFileSystem not found
at org.apache.hadoop.conf.Configuration.getClassByName(Configuration.java:2101)
at org.apache.hadoop.conf.Configuration.getClass(Configuration.java:2193)
... 39 more
Driver stacktrace:
at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1891)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1879)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1878)
at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)
at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1878)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:927)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:927)
at scala.Option.foreach(Option.scala:257)
at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:927)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:2112)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2061)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2050)
at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:49)
at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:738)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2061)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2082)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2101)
at org.apache.spark.sql.execution.SparkPlan.executeTake(SparkPlan.scala:365)
at org.apache.spark.sql.execution.CollectLimitExec.executeCollect(limit.scala:38)
at org.apache.spark.sql.Dataset.org$apache$spark$sql$Dataset$$collectFromPlan(Dataset.scala:3389)
at org.apache.spark.sql.Dataset$$anonfun$head$1.apply(Dataset.scala:2550)
at org.apache.spark.sql.Dataset$$anonfun$head$1.apply(Dataset.scala:2550)
at org.apache.spark.sql.Dataset$$anonfun$52.apply(Dataset.scala:3370)
at org.apache.spark.sql.execution.SQLExecution$$anonfun$withNewExecutionId$1.apply(SQLExecution.scala:80)
at org.apache.spark.sql.execution.SQLExecution$.withSQLConfPropagated(SQLExecution.scala:127)
at org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:75)
at org.apache.spark.sql.Dataset.withAction(Dataset.scala:3369)
at org.apache.spark.sql.Dataset.head(Dataset.scala:2550)
at org.apache.spark.sql.Dataset.take(Dataset.scala:2764)
at org.apache.spark.sql.Dataset.getRows(Dataset.scala:254)
at org.apache.spark.sql.Dataset.showString(Dataset.scala:291)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:244)
at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357)
at py4j.Gateway.invoke(Gateway.java:282)
at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:132)
at py4j.commands.CallCommand.execute(CallCommand.java:79)
at py4j.GatewayConnection.run(GatewayConnection.java:238)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.RuntimeException: java.lang.ClassNotFoundException: Class org.apache.hadoop.fs.s3a.S3AFileSystem not found
at org.apache.hadoop.conf.Configuration.getClass(Configuration.java:2195)
at org.apache.hadoop.fs.FileSystem.getFileSystemClass(FileSystem.java:2654)
at org.apache.hadoop.fs.FileSystem.createFileSystem(FileSystem.java:2667)
at org.apache.hadoop.fs.FileSystem.access$200(FileSystem.java:94)
at org.apache.hadoop.fs.FileSystem$Cache.getInternal(FileSystem.java:2703)
at org.apache.hadoop.fs.FileSystem$Cache.get(FileSystem.java:2685)
at org.apache.hadoop.fs.FileSystem.get(FileSystem.java:373)
at org.apache.hadoop.fs.Path.getFileSystem(Path.java:295)
at org.apache.hadoop.mapred.LineRecordReader.<init>(LineRecordReader.java:108)
at org.apache.hadoop.mapred.TextInputFormat.getRecordReader(TextInputFormat.java:67)
at org.apache.spark.rdd.HadoopRDD$$anon$1.liftedTree1$1(HadoopRDD.scala:267)
at org.apache.spark.rdd.HadoopRDD$$anon$1.<init>(HadoopRDD.scala:266)
at org.apache.spark.rdd.HadoopRDD.compute(HadoopRDD.scala:224)
at org.apache.spark.rdd.HadoopRDD.compute(HadoopRDD.scala:95)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:310)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:99)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:55)
at org.apache.spark.scheduler.Task.run(Task.scala:123)
at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:750)
Caused by: java.lang.ClassNotFoundException: Class org.apache.hadoop.fs.s3a.S3AFileSystem not found
at org.apache.hadoop.conf.Configuration.getClassByName(Configuration.java:2101)
at org.apache.hadoop.conf.Configuration.getClass(Configuration.java:2193)
... 39 more
Please help me to fix the issue.
The issue has been fixed after adding AWS jars to the image which I was using to launch Spark-executor pods.
I am running spark jobs using datafactory in azure databricks.
My cluster vesion is 9.1 LTS ML (includes Apache Spark 3.1.2, Scala 2.12).
I am writing data on azure blob storage.
While writing job gives me error.
It shows error on line
AllDataDF.coalesce(1).write.format("delta").mode("append").option("mergeSchema", "true").save(path)
And traceback in as below.
/databricks/spark/python/pyspark/sql/readwriter.py in save(self, path, format, mode, partitionBy, **options)
1134 self._jwrite.save()
1135 else:
-> 1136 self._jwrite.save(path)
1137
1138 #since(1.4)
/databricks/spark/python/lib/py4j-0.10.9-src.zip/py4j/java_gateway.py in __call__(self, *args)
1302
1303 answer = self.gateway_client.send_command(command)
-> 1304 return_value = get_return_value(
1305 answer, self.gateway_client, self.target_id, self.name)
1306
/databricks/spark/python/pyspark/sql/utils.py in deco(*a, **kw)
115 def deco(*a, **kw):
116 try:
--> 117 return f(*a, **kw)
118 except py4j.protocol.Py4JJavaError as e:
119 converted = convert_exception(e.java_exception)
/databricks/spark/python/lib/py4j-0.10.9-src.zip/py4j/protocol.py in get_return_value(answer, gateway_client, target_id, name)
324 value = OUTPUT_CONVERTER[type](answer[2:], gateway_client)
325 if answer[1] == REFERENCE_TYPE:
--> 326 raise Py4JJavaError(
327 "An error occurred while calling {0}{1}{2}.\n".
328 format(target_id, ".", name), value)
Py4JJavaError: An error occurred while calling o7344.save.
: org.apache.spark.SparkException: Job aborted.
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.write(FileFormatWriter.scala:307)
at com.databricks.sql.transaction.tahoe.files.TransactionalWriteEdge.$anonfun$writeFiles$5(TransactionalWriteEdge.scala:349)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:23)
at org.apache.spark.sql.execution.SQLExecution$.$anonfun$withCustomExecutionEnv$5(SQLExecution.scala:130)
at org.apache.spark.sql.execution.SQLExecution$.withSQLConfPropagated(SQLExecution.scala:273)
at org.apache.spark.sql.execution.SQLExecution$.$anonfun$withCustomExecutionEnv$1(SQLExecution.scala:104)
at org.apache.spark.sql.SparkSession.withActive(SparkSession.scala:854)
at org.apache.spark.sql.execution.SQLExecution$.withCustomExecutionEnv(SQLExecution.scala:77)
at org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:223)
at com.databricks.sql.transaction.tahoe.files.TransactionalWriteEdge.$anonfun$writeFiles$1(TransactionalWriteEdge.scala:296)
at com.databricks.spark.util.FrameProfiler$.record(FrameProfiler.scala:80)
at com.databricks.sql.transaction.tahoe.metering.DeltaLogging.$anonfun$recordDeltaOperation$5(DeltaLogging.scala:122)
at com.databricks.logging.UsageLogging.$anonfun$recordOperation$1(UsageLogging.scala:395)
at com.databricks.logging.UsageLogging.executeThunkAndCaptureResultTags$1(UsageLogging.scala:484)
at com.databricks.logging.UsageLogging.$anonfun$recordOperationWithResultTags$4(UsageLogging.scala:504)
at com.databricks.logging.UsageLogging.$anonfun$withAttributionContext$1(UsageLogging.scala:266)
at scala.util.DynamicVariable.withValue(DynamicVariable.scala:62)
at com.databricks.logging.UsageLogging.withAttributionContext(UsageLogging.scala:261)
at com.databricks.logging.UsageLogging.withAttributionContext$(UsageLogging.scala:258)
at com.databricks.spark.util.PublicDBLogging.withAttributionContext(DatabricksSparkUsageLogger.scala:20)
at com.databricks.logging.UsageLogging.withAttributionTags(UsageLogging.scala:305)
at com.databricks.logging.UsageLogging.withAttributionTags$(UsageLogging.scala:297)
at com.databricks.spark.util.PublicDBLogging.withAttributionTags(DatabricksSparkUsageLogger.scala:20)
at com.databricks.logging.UsageLogging.recordOperationWithResultTags(UsageLogging.scala:479)
at com.databricks.logging.UsageLogging.recordOperationWithResultTags$(UsageLogging.scala:404)
at com.databricks.spark.util.PublicDBLogging.recordOperationWithResultTags(DatabricksSparkUsageLogger.scala:20)
at com.databricks.logging.UsageLogging.recordOperation(UsageLogging.scala:395)
at com.databricks.logging.UsageLogging.recordOperation$(UsageLogging.scala:367)
at com.databricks.spark.util.PublicDBLogging.recordOperation(DatabricksSparkUsageLogger.scala:20)
at com.databricks.spark.util.PublicDBLogging.recordOperation0(DatabricksSparkUsageLogger.scala:57)
at com.databricks.spark.util.DatabricksSparkUsageLogger.recordOperation(DatabricksSparkUsageLogger.scala:137)
at com.databricks.spark.util.UsageLogger.recordOperation(UsageLogger.scala:71)
at com.databricks.spark.util.UsageLogger.recordOperation$(UsageLogger.scala:58)
at com.databricks.spark.util.DatabricksSparkUsageLogger.recordOperation(DatabricksSparkUsageLogger.scala:98)
at com.databricks.spark.util.UsageLogging.recordOperation(UsageLogger.scala:429)
at com.databricks.spark.util.UsageLogging.recordOperation$(UsageLogger.scala:408)
at com.databricks.sql.transaction.tahoe.OptimisticTransaction.recordOperation(OptimisticTransaction.scala:98)
at com.databricks.sql.transaction.tahoe.metering.DeltaLogging.recordDeltaOperation(DeltaLogging.scala:120)
at com.databricks.sql.transaction.tahoe.metering.DeltaLogging.recordDeltaOperation$(DeltaLogging.scala:104)
at com.databricks.sql.transaction.tahoe.OptimisticTransaction.recordDeltaOperation(OptimisticTransaction.scala:98)
at com.databricks.sql.transaction.tahoe.files.TransactionalWriteEdge.writeFiles(TransactionalWriteEdge.scala:213)
at com.databricks.sql.transaction.tahoe.files.TransactionalWriteEdge.writeFiles$(TransactionalWriteEdge.scala:207)
at com.databricks.sql.transaction.tahoe.OptimisticTransaction.writeFiles(OptimisticTransaction.scala:98)
at com.databricks.sql.transaction.tahoe.files.TransactionalWriteEdge.writeFiles(TransactionalWriteEdge.scala:389)
at com.databricks.sql.transaction.tahoe.files.TransactionalWriteEdge.writeFiles$(TransactionalWriteEdge.scala:382)
at com.databricks.sql.transaction.tahoe.OptimisticTransaction.writeFiles(OptimisticTransaction.scala:98)
at com.databricks.sql.transaction.tahoe.files.TransactionalWrite.writeFiles(TransactionalWrite.scala:158)
at com.databricks.sql.transaction.tahoe.files.TransactionalWrite.writeFiles$(TransactionalWrite.scala:155)
at com.databricks.sql.transaction.tahoe.OptimisticTransaction.writeFiles(OptimisticTransaction.scala:98)
at com.databricks.sql.transaction.tahoe.commands.WriteIntoDelta.write(WriteIntoDelta.scala:175)
at com.databricks.sql.transaction.tahoe.commands.WriteIntoDelta.$anonfun$run$2(WriteIntoDelta.scala:91)
at com.databricks.sql.transaction.tahoe.commands.WriteIntoDelta.$anonfun$run$2$adapted(WriteIntoDelta.scala:83)
at com.databricks.sql.transaction.tahoe.DeltaLog.withNewTransaction(DeltaLog.scala:206)
at com.databricks.sql.transaction.tahoe.commands.WriteIntoDelta.$anonfun$run$1(WriteIntoDelta.scala:83)
at com.databricks.sql.acl.CheckPermissions$.trusted(CheckPermissions.scala:1413)
at com.databricks.sql.transaction.tahoe.commands.WriteIntoDelta.run(WriteIntoDelta.scala:82)
at com.databricks.sql.transaction.tahoe.sources.DeltaDataSource.createRelation(DeltaDataSource.scala:164)
at org.apache.spark.sql.execution.datasources.SaveIntoDataSourceCommand.run(SaveIntoDataSourceCommand.scala:48)
at org.apache.spark.sql.execution.command.ExecutedCommandExec.sideEffectResult$lzycompute(commands.scala:75)
at org.apache.spark.sql.execution.command.ExecutedCommandExec.sideEffectResult(commands.scala:73)
at org.apache.spark.sql.execution.command.ExecutedCommandExec.doExecute(commands.scala:96)
at org.apache.spark.sql.execution.SparkPlan.$anonfun$execute$1(SparkPlan.scala:213)
at org.apache.spark.sql.execution.SparkPlan.$anonfun$executeQuery$1(SparkPlan.scala:257)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:165)
at org.apache.spark.sql.execution.SparkPlan.executeQuery(SparkPlan.scala:253)
at org.apache.spark.sql.execution.SparkPlan.execute(SparkPlan.scala:209)
at org.apache.spark.sql.execution.QueryExecution.toRdd$lzycompute(QueryExecution.scala:167)
at org.apache.spark.sql.execution.QueryExecution.toRdd(QueryExecution.scala:166)
at org.apache.spark.sql.DataFrameWriter.$anonfun$runCommand$1(DataFrameWriter.scala:1080)
at org.apache.spark.sql.execution.SQLExecution$.$anonfun$withCustomExecutionEnv$5(SQLExecution.scala:130)
at org.apache.spark.sql.execution.SQLExecution$.withSQLConfPropagated(SQLExecution.scala:273)
at org.apache.spark.sql.execution.SQLExecution$.$anonfun$withCustomExecutionEnv$1(SQLExecution.scala:104)
at org.apache.spark.sql.SparkSession.withActive(SparkSession.scala:854)
at org.apache.spark.sql.execution.SQLExecution$.withCustomExecutionEnv(SQLExecution.scala:77)
at org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:223)
at org.apache.spark.sql.DataFrameWriter.runCommand(DataFrameWriter.scala:1080)
at org.apache.spark.sql.DataFrameWriter.saveToV1Source(DataFrameWriter.scala:469)
at org.apache.spark.sql.DataFrameWriter.saveInternal(DataFrameWriter.scala:386)
at org.apache.spark.sql.DataFrameWriter.save(DataFrameWriter.scala:304)
at sun.reflect.GeneratedMethodAccessor531.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:244)
at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:380)
at py4j.Gateway.invoke(Gateway.java:295)
at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:132)
at py4j.commands.CallCommand.execute(CallCommand.java:79)
at py4j.GatewayConnection.run(GatewayConnection.java:251)
at java.lang.Thread.run(Thread.java:748)
Caused by: org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 8352.0 failed 4 times, most recent failure: Lost task 0.3 in stage 8352.0 (TID 10576) (10.139.64.18 executor 17): org.apache.spark.SparkException: Task failed while writing rows.
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.executeTask(FileFormatWriter.scala:396)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.$anonfun$write$15(FileFormatWriter.scala:284)
at org.apache.spark.scheduler.ResultTask.$anonfun$runTask$3(ResultTask.scala:75)
at com.databricks.spark.util.ExecutorFrameProfiler$.record(ExecutorFrameProfiler.scala:110)
at org.apache.spark.scheduler.ResultTask.$anonfun$runTask$1(ResultTask.scala:75)
at com.databricks.spark.util.ExecutorFrameProfiler$.record(ExecutorFrameProfiler.scala:110)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:55)
at org.apache.spark.scheduler.Task.doRunTask(Task.scala:150)
at org.apache.spark.scheduler.Task.$anonfun$run$1(Task.scala:119)
at com.databricks.spark.util.ExecutorFrameProfiler$.record(ExecutorFrameProfiler.scala:110)
at org.apache.spark.scheduler.Task.run(Task.scala:91)
at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$13(Executor.scala:813)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1620)
at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$4(Executor.scala:816)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:23)
at com.databricks.spark.util.ExecutorFrameProfiler$.record(ExecutorFrameProfiler.scala:110)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:672)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.util.NoSuchElementException
at org.apache.spark.sql.vectorized.ColumnarBatch$1.next(ColumnarBatch.java:69)
at org.apache.spark.sql.vectorized.ColumnarBatch$1.next(ColumnarBatch.java:58)
at scala.collection.convert.Wrappers$JIteratorWrapper.next(Wrappers.scala:44)
at org.apache.spark.sql.execution.arrow.ArrowConverters$$anon$4.next(ArrowConverters.scala:401)
at org.apache.spark.sql.execution.arrow.ArrowConverters$$anon$4.next(ArrowConverters.scala:382)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage138.processNext(Unknown Source)
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anon$1.hasNext(WholeStageCodegenExec.scala:757)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage183.processNext(Unknown Source)
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anon$1.hasNext(WholeStageCodegenExec.scala:757)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:488)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.$anonfun$executeTask$2(FileFormatWriter.scala:374)
at org.apache.spark.util.Utils$.tryWithSafeFinallyAndFailureCallbacks(Utils.scala:1654)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.executeTask(FileFormatWriter.scala:383)
... 19 more
Suppressed: java.io.IOException: can not write PageHeader(type:DICTIONARY_PAGE, uncompressed_page_size:176, compressed_page_size:101, crc:-1384879305, dictionary_page_header:DictionaryPageHeader(num_values:22, encoding:PLAIN_DICTIONARY))
at org.apache.parquet.format.Util.write(Util.java:224)
at org.apache.parquet.format.Util.writePageHeader(Util.java:61)
at org.apache.parquet.format.converter.ParquetMetadataConverter.writeDictionaryPageHeader(ParquetMetadataConverter.java:1190)
at org.apache.parquet.hadoop.ParquetFileWriter.writeDictionaryPage(ParquetFileWriter.java:374)
at org.apache.parquet.hadoop.ColumnChunkPageWriteStore$ColumnChunkPageWriter.writeToFileWriter(ColumnChunkPageWriteStore.java:238)
at org.apache.parquet.hadoop.ColumnChunkPageWriteStore.flushToFileWriter(ColumnChunkPageWriteStore.java:316)
at org.apache.parquet.hadoop.InternalParquetRecordWriter.flushRowGroupToStore(InternalParquetRecordWriter.java:202)
at org.apache.parquet.hadoop.InternalParquetRecordWriter.close(InternalParquetRecordWriter.java:127)
at org.apache.parquet.hadoop.ParquetRecordWriter.close(ParquetRecordWriter.java:165)
at org.apache.spark.sql.execution.datasources.parquet.ParquetOutputWriter.close(ParquetOutputWriter.scala:41)
at org.apache.spark.sql.execution.datasources.FileFormatDataWriter.releaseResources(FileFormatDataWriter.scala:58)
at org.apache.spark.sql.execution.datasources.FileFormatDataWriter.abort(FileFormatDataWriter.scala:84)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.$anonfun$executeTask$3(FileFormatWriter.scala:380)
at org.apache.spark.util.Utils$.tryWithSafeFinallyAndFailureCallbacks(Utils.scala:1665)
... 20 more
Caused by: shaded.parquet.org.apache.thrift.transport.TTransportException: java.io.IOException: Stream is closed!
at shaded.parquet.org.apache.thrift.transport.TIOStreamTransport.write(TIOStreamTransport.java:147)
at shaded.parquet.org.apache.thrift.transport.TTransport.write(TTransport.java:107)
at shaded.parquet.org.apache.thrift.protocol.TCompactProtocol.writeByteDirect(TCompactProtocol.java:482)
at shaded.parquet.org.apache.thrift.protocol.TCompactProtocol.writeByteDirect(TCompactProtocol.java:489)
at shaded.parquet.org.apache.thrift.protocol.TCompactProtocol.writeFieldBeginInternal(TCompactProtocol.java:252)
at shaded.parquet.org.apache.thrift.protocol.TCompactProtocol.writeFieldBegin(TCompactProtocol.java:234)
at org.apache.parquet.format.InterningProtocol.writeFieldBegin(InterningProtocol.java:74)
at org.apache.parquet.format.PageHeader$PageHeaderStandardScheme.write(PageHeader.java:1068)
at org.apache.parquet.format.PageHeader$PageHeaderStandardScheme.write(PageHeader.java:966)
at org.apache.parquet.format.PageHeader.write(PageHeader.java:847)
at org.apache.parquet.format.Util.write(Util.java:222)
... 33 more
Caused by: java.io.IOException: Stream is closed!
at shaded.databricks.azurebfs.org.apache.hadoop.fs.azurebfs.services.AbfsOutputStream.close(AbfsOutputStream.java:344)
at shaded.databricks.azurebfs.org.apache.hadoop.fs.azurebfs.services.PageCRCVerifyingAbfsOutputStream.close(PageCRCVerifyingAbfsOutputStream.java:48)
at org.apache.hadoop.fs.FSDataOutputStream$PositionCache.close(FSDataOutputStream.java:72)
at org.apache.hadoop.fs.FSDataOutputStream.close(FSDataOutputStream.java:106)
at com.databricks.backend.daemon.data.common.CancellableOutputStream.cancel(CancellableOutputStream.scala:24)
at com.databricks.backend.daemon.data.client.DatabricksFileSystemV2.$anonfun$create$4(DatabricksFileSystemV2.scala:630)
at org.apache.spark.SparkUtils$.$anonfun$onTaskFailure$2(SparkUtils.scala:58)
at org.apache.spark.SparkUtils$.$anonfun$onTaskFailure$2$adapted(SparkUtils.scala:57)
at org.apache.spark.TaskContext$$anon$2.onTaskFailure(TaskContext.scala:177)
at org.apache.spark.TaskContextImpl.$anonfun$invokeTaskFailureListeners$1(TaskContextImpl.scala:150)
at org.apache.spark.TaskContextImpl.$anonfun$invokeTaskFailureListeners$1$adapted(TaskContextImpl.scala:150)
at org.apache.spark.TaskContextImpl.invokeListeners(TaskContextImpl.scala:197)
at org.apache.spark.TaskContextImpl.invokeTaskFailureListeners(TaskContextImpl.scala:150)
at org.apache.spark.TaskContextImpl.markTaskFailed(TaskContextImpl.scala:127)
at org.apache.spark.util.Utils$.tryWithSafeFinallyAndFailureCallbacks(Utils.scala:1663)
... 20 more
Driver stacktrace:
at org.apache.spark.scheduler.DAGScheduler.failJobAndIndependentStages(DAGScheduler.scala:2828)
at org.apache.spark.scheduler.DAGScheduler.$anonfun$abortStage$2(DAGScheduler.scala:2775)
at org.apache.spark.scheduler.DAGScheduler.$anonfun$abortStage$2$adapted(DAGScheduler.scala:2769)
at scala.collection.mutable.ResizableArray.foreach(ResizableArray.scala:62)
at scala.collection.mutable.ResizableArray.foreach$(ResizableArray.scala:55)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:49)
at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:2769)
at org.apache.spark.scheduler.DAGScheduler.$anonfun$handleTaskSetFailed$1(DAGScheduler.scala:1305)
at org.apache.spark.scheduler.DAGScheduler.$anonfun$handleTaskSetFailed$1$adapted(DAGScheduler.scala:1305)
at scala.Option.foreach(Option.scala:407)
at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:1305)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:3036)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2977)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2965)
at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:49)
at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:1067)
at org.apache.spark.SparkContext.runJobInternal(SparkContext.scala:2477)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2460)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.write(FileFormatWriter.scala:274)
... 88 more
Caused by: org.apache.spark.SparkException: Task failed while writing rows.
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.executeTask(FileFormatWriter.scala:396)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.$anonfun$write$15(FileFormatWriter.scala:284)
at org.apache.spark.scheduler.ResultTask.$anonfun$runTask$3(ResultTask.scala:75)
at com.databricks.spark.util.ExecutorFrameProfiler$.record(ExecutorFrameProfiler.scala:110)
at org.apache.spark.scheduler.ResultTask.$anonfun$runTask$1(ResultTask.scala:75)
at com.databricks.spark.util.ExecutorFrameProfiler$.record(ExecutorFrameProfiler.scala:110)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:55)
at org.apache.spark.scheduler.Task.doRunTask(Task.scala:150)
at org.apache.spark.scheduler.Task.$anonfun$run$1(Task.scala:119)
at com.databricks.spark.util.ExecutorFrameProfiler$.record(ExecutorFrameProfiler.scala:110)
at org.apache.spark.scheduler.Task.run(Task.scala:91)
at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$13(Executor.scala:813)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1620)
at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$4(Executor.scala:816)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:23)
at com.databricks.spark.util.ExecutorFrameProfiler$.record(ExecutorFrameProfiler.scala:110)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:672)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
... 1 more
Caused by: java.util.NoSuchElementException
at org.apache.spark.sql.vectorized.ColumnarBatch$1.next(ColumnarBatch.java:69)
at org.apache.spark.sql.vectorized.ColumnarBatch$1.next(ColumnarBatch.java:58)
at scala.collection.convert.Wrappers$JIteratorWrapper.next(Wrappers.scala:44)
at org.apache.spark.sql.execution.arrow.ArrowConverters$$anon$4.next(ArrowConverters.scala:401)
at org.apache.spark.sql.execution.arrow.ArrowConverters$$anon$4.next(ArrowConverters.scala:382)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage138.processNext(Unknown Source)
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anon$1.hasNext(WholeStageCodegenExec.scala:757)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage183.processNext(Unknown Source)
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anon$1.hasNext(WholeStageCodegenExec.scala:757)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:488)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.$anonfun$executeTask$2(FileFormatWriter.scala:374)
at org.apache.spark.util.Utils$.tryWithSafeFinallyAndFailureCallbacks(Utils.scala:1654)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.executeTask(FileFormatWriter.scala:383)
... 19 more
Suppressed: java.io.IOException: can not write PageHeader(type:DICTIONARY_PAGE, uncompressed_page_size:176, compressed_page_size:101, crc:-1384879305, dictionary_page_header:DictionaryPageHeader(num_values:22, encoding:PLAIN_DICTIONARY))
at org.apache.parquet.format.Util.write(Util.java:224)
at org.apache.parquet.format.Util.writePageHeader(Util.java:61)
at org.apache.parquet.format.converter.ParquetMetadataConverter.writeDictionaryPageHeader(ParquetMetadataConverter.java:1190)
at org.apache.parquet.hadoop.ParquetFileWriter.writeDictionaryPage(ParquetFileWriter.java:374)
at org.apache.parquet.hadoop.ColumnChunkPageWriteStore$ColumnChunkPageWriter.writeToFileWriter(ColumnChunkPageWriteStore.java:238)
at org.apache.parquet.hadoop.ColumnChunkPageWriteStore.flushToFileWriter(ColumnChunkPageWriteStore.java:316)
at org.apache.parquet.hadoop.InternalParquetRecordWriter.flushRowGroupToStore(InternalParquetRecordWriter.java:202)
at org.apache.parquet.hadoop.InternalParquetRecordWriter.close(InternalParquetRecordWriter.java:127)
at org.apache.parquet.hadoop.ParquetRecordWriter.close(ParquetRecordWriter.java:165)
at org.apache.spark.sql.execution.datasources.parquet.ParquetOutputWriter.close(ParquetOutputWriter.scala:41)
at org.apache.spark.sql.execution.datasources.FileFormatDataWriter.releaseResources(FileFormatDataWriter.scala:58)
at org.apache.spark.sql.execution.datasources.FileFormatDataWriter.abort(FileFormatDataWriter.scala:84)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.$anonfun$executeTask$3(FileFormatWriter.scala:380)
at org.apache.spark.util.Utils$.tryWithSafeFinallyAndFailureCallbacks(Utils.scala:1665)
... 20 more
Caused by: shaded.parquet.org.apache.thrift.transport.TTransportException: java.io.IOException: Stream is closed!
at shaded.parquet.org.apache.thrift.transport.TIOStreamTransport.write(TIOStreamTransport.java:147)
at shaded.parquet.org.apache.thrift.transport.TTransport.write(TTransport.java:107)
at shaded.parquet.org.apache.thrift.protocol.TCompactProtocol.writeByteDirect(TCompactProtocol.java:482)
at shaded.parquet.org.apache.thrift.protocol.TCompactProtocol.writeByteDirect(TCompactProtocol.java:489)
at shaded.parquet.org.apache.thrift.protocol.TCompactProtocol.writeFieldBeginInternal(TCompactProtocol.java:252)
at shaded.parquet.org.apache.thrift.protocol.TCompactProtocol.writeFieldBegin(TCompactProtocol.java:234)
at org.apache.parquet.format.InterningProtocol.writeFieldBegin(InterningProtocol.java:74)
at org.apache.parquet.format.PageHeader$PageHeaderStandardScheme.write(PageHeader.java:1068)
at org.apache.parquet.format.PageHeader$PageHeaderStandardScheme.write(PageHeader.java:966)
at org.apache.parquet.format.PageHeader.write(PageHeader.java:847)
at org.apache.parquet.format.Util.write(Util.java:222)
... 33 more
Caused by: java.io.IOException: Stream is closed!
at shaded.databricks.azurebfs.org.apache.hadoop.fs.azurebfs.services.AbfsOutputStream.close(AbfsOutputStream.java:344)
at shaded.databricks.azurebfs.org.apache.hadoop.fs.azurebfs.services.PageCRCVerifyingAbfsOutputStream.close(PageCRCVerifyingAbfsOutputStream.java:48)
at org.apache.hadoop.fs.FSDataOutputStream$PositionCache.close(FSDataOutputStream.java:72)
at org.apache.hadoop.fs.FSDataOutputStream.close(FSDataOutputStream.java:106)
at com.databricks.backend.daemon.data.common.CancellableOutputStream.cancel(CancellableOutputStream.scala:24)
at com.databricks.backend.daemon.data.client.DatabricksFileSystemV2.$anonfun$create$4(DatabricksFileSystemV2.scala:630)
at org.apache.spark.SparkUtils$.$anonfun$onTaskFailure$2(SparkUtils.scala:58)
at org.apache.spark.SparkUtils$.$anonfun$onTaskFailure$2$adapted(SparkUtils.scala:57)
at org.apache.spark.TaskContext$$anon$2.onTaskFailure(TaskContext.scala:177)
at org.apache.spark.TaskContextImpl.$anonfun$invokeTaskFailureListeners$1(TaskContextImpl.scala:150)
at org.apache.spark.TaskContextImpl.$anonfun$invokeTaskFailureListeners$1$adapted(TaskContextImpl.scala:150)
at org.apache.spark.TaskContextImpl.invokeListeners(TaskContextImpl.scala:197)
at org.apache.spark.TaskContextImpl.invokeTaskFailureListeners(TaskContextImpl.scala:150)
at org.apache.spark.TaskContextImpl.markTaskFailed(TaskContextImpl.scala:127)
at org.apache.spark.util.Utils$.tryWithSafeFinallyAndFailureCallbacks(Utils.scala:1663)
... 20 more
Job runs every month so it should not be a code error.
This is a Production code running fine until last week. Then, this parquet write error showed up and never getting resolved.
While writing to AWS S3 in parquet format, I tried several dataframe.repartitions(300) - 300, 500, 2400, 6000. But no luck. The code by itself runs fine, but some times gives count error if I add a count() on a dataframe. (intermittently).
So I removed all the count()s in the code to run the code without errors. Now, It fails while writing to the AWS s3 location.
The code is running on Databricks notebook - Databricks Runtime Version
8.3 (includes Apache Spark 3.1.1, Scala 2.12). The code is written in pyspark(python 3.8). The code runs on AWS r5.8xlarge instances.
I am stuck with this, any help is very much appreciated.
Py4JJavaError Traceback (most recent call last)
<command-2026517708936858> in <module>
3
4 #save data_agg for next step
----> 5 dataframe.repartition(6000).write.parquet(s3://path_to_write, mode='overwrite')
/databricks/spark/python/pyspark/sql/readwriter.py in parquet(self, path, mode, partitionBy, compression)
1275 self.partitionBy(partitionBy)
1276 self._set_opts(compression=compression)
-> 1277 self._jwrite.parquet(path)
1278
1279 def text(self, path, compression=None, lineSep=None):
/databricks/spark/python/lib/py4j-0.10.9-src.zip/py4j/java_gateway.py in __call__(self, *args)
1302
1303 answer = self.gateway_client.send_command(command)
-> 1304 return_value = get_return_value(
1305 answer, self.gateway_client, self.target_id, self.name)
1306
/databricks/spark/python/pyspark/sql/utils.py in deco(*a, **kw)
115 def deco(*a, **kw):
116 try:
--> 117 return f(*a, **kw)
118 except py4j.protocol.Py4JJavaError as e:
119 converted = convert_exception(e.java_exception)
/databricks/spark/python/lib/py4j-0.10.9-src.zip/py4j/protocol.py in get_return_value(answer, gateway_client, target_id, name)
324 value = OUTPUT_CONVERTER[type](answer[2:], gateway_client)
325 if answer[1] == REFERENCE_TYPE:
--> 326 raise Py4JJavaError(
327 "An error occurred while calling {0}{1}{2}.\n".
328 format(target_id, ".", name), value)
Py4JJavaError: An error occurred while calling o1773.parquet.
: org.apache.spark.SparkException: Job aborted.
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.write(FileFormatWriter.scala:289)
at org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelationCommand.run(InsertIntoHadoopFsRelationCommand.scala:203)
at org.apache.spark.sql.execution.command.DataWritingCommandExec.sideEffectResult$lzycompute(commands.scala:121)
at org.apache.spark.sql.execution.command.DataWritingCommandExec.sideEffectResult(commands.scala:119)
at org.apache.spark.sql.execution.command.DataWritingCommandExec.doExecute(commands.scala:144)
at org.apache.spark.sql.execution.SparkPlan.$anonfun$execute$1(SparkPlan.scala:196)
at org.apache.spark.sql.execution.SparkPlan.$anonfun$executeQuery$1(SparkPlan.scala:240)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:165)
at org.apache.spark.sql.execution.SparkPlan.executeQuery(SparkPlan.scala:236)
at org.apache.spark.sql.execution.SparkPlan.execute(SparkPlan.scala:192)
at org.apache.spark.sql.execution.QueryExecution.toRdd$lzycompute(QueryExecution.scala:167)
at org.apache.spark.sql.execution.QueryExecution.toRdd(QueryExecution.scala:166)
at org.apache.spark.sql.DataFrameWriter.$anonfun$runCommand$1(DataFrameWriter.scala:1079)
at org.apache.spark.sql.execution.SQLExecution$.$anonfun$withCustomExecutionEnv$5(SQLExecution.scala:126)
at org.apache.spark.sql.execution.SQLExecution$.withSQLConfPropagated(SQLExecution.scala:267)
at org.apache.spark.sql.execution.SQLExecution$.$anonfun$withCustomExecutionEnv$1(SQLExecution.scala:104)
at org.apache.spark.sql.SparkSession.withActive(SparkSession.scala:852)
at org.apache.spark.sql.execution.SQLExecution$.withCustomExecutionEnv(SQLExecution.scala:77)
at org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:217)
at org.apache.spark.sql.DataFrameWriter.runCommand(DataFrameWriter.scala:1079)
at org.apache.spark.sql.DataFrameWriter.saveToV1Source(DataFrameWriter.scala:468)
at org.apache.spark.sql.DataFrameWriter.saveInternal(DataFrameWriter.scala:438)
at org.apache.spark.sql.DataFrameWriter.save(DataFrameWriter.scala:303)
at org.apache.spark.sql.DataFrameWriter.parquet(DataFrameWriter.scala:964)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:244)
at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:380)
at py4j.Gateway.invoke(Gateway.java:295)
at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:132)
at py4j.commands.CallCommand.execute(CallCommand.java:79)
at py4j.GatewayConnection.run(GatewayConnection.java:251)
at java.lang.Thread.run(Thread.java:748)
Caused by: org.apache.spark.SparkException: Multiple failures in stage materialization.
at org.apache.spark.sql.execution.adaptive.AdaptiveSparkPlanExec.cleanUpAndThrowException(AdaptiveSparkPlanExec.scala:838)
at org.apache.spark.sql.execution.adaptive.AdaptiveSparkPlanExec.$anonfun$getFinalPhysicalPlan$1(AdaptiveSparkPlanExec.scala:321)
at org.apache.spark.sql.SparkSession.withActive(SparkSession.scala:852)
at org.apache.spark.sql.execution.adaptive.AdaptiveSparkPlanExec.getFinalPhysicalPlan(AdaptiveSparkPlanExec.scala:276)
at org.apache.spark.sql.execution.adaptive.AdaptiveSparkPlanExec.doExecute(AdaptiveSparkPlanExec.scala:378)
at org.apache.spark.sql.execution.SparkPlan.$anonfun$execute$1(SparkPlan.scala:196)
at org.apache.spark.sql.execution.SparkPlan.$anonfun$executeQuery$1(SparkPlan.scala:240)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:165)
at org.apache.spark.sql.execution.SparkPlan.executeQuery(SparkPlan.scala:236)
at org.apache.spark.sql.execution.SparkPlan.execute(SparkPlan.scala:192)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.write(FileFormatWriter.scala:233)
... 34 more
Suppressed: org.apache.spark.SparkException: Job aborted due to stage failure: ShuffleMapStage 46 (parquet at NativeMethodAccessorImpl.java:0) has failed the maximum allowable number of times: 4. Most recent failure reason: org.apache.spark.shuffle.FetchFailedException: Connecting to /100.64.19.5:4048 failed in the last 4750 ms, fail this connection directly
at org.apache.spark.storage.ShuffleBlockFetcherIterator.throwFetchFailedException(ShuffleBlockFetcherIterator.scala:771)
at org.apache.spark.storage.ShuffleBlockFetcherIterator.$anonfun$next$1(ShuffleBlockFetcherIterator.scala:686)
at com.databricks.spark.util.ExecutorFrameProfiler$.record(ExecutorFrameProfiler.scala:110)
at org.apache.spark.storage.ShuffleBlockFetcherIterator.next(ShuffleBlockFetcherIterator.scala:577)
at org.apache.spark.storage.ShuffleBlockFetcherIterator.next(ShuffleBlockFetcherIterator.scala:70)
at org.apache.spark.util.CompletionIterator.next(CompletionIterator.scala:29) at scala.collection.Iterator$$anon$11.nextCur(Iterator.scala:484)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:490)
at scala.collection.Iterator$$anon$10.hasNext(Iterator.scala:458)
at org.apache.spark.util.CompletionIterator.hasNext(CompletionIterator.scala:31)
at org.apache.spark.InterruptibleIterator.hasNext(InterruptibleIterator.scala:37)
at scala.collection.Iterator$$anon$10.hasNext(Iterator.scala:458)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage14.agg_doAggregateWithKeys_0$(Unknown Source)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage14.sort_addToSorter_0$(Unknown Source)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage14.processNext(Unknown Source)
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anon$1.hasNext(WholeStageCodegenExec.scala:757)
at org.apache.spark.sql.execution.RowIteratorFromScala.advanceNext(RowIterator.scala:83)
at org.apache.spark.sql.execution.joins.SortMergeFullOuterJoinScanner.advancedLeft(SortMergeJoinExec.scala:1088)
at org.apache.spark.sql.execution.joins.SortMergeFullOuterJoinScanner.<init>(SortMergeJoinExec.scala:1078)
at org.apache.spark.sql.execution.joins.SortMergeJoinExec.$anonfun$doExecute$1(SortMergeJoinExec.scala:222)
at org.apache.spark.rdd.ZippedPartitionsRDD2.compute(ZippedPartitionsRDD.scala:125)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:380) at org.apache.spark.rdd.RDD.iterator(RDD.scala:344)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:60)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:380)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:344)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:60)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:380)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:344)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:60)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:380)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:344)
at org.apache.spark.shuffle.ShuffleWriteProcessor.write(ShuffleWriteProcessor.scala:59)
at org.apache.spark.scheduler.ShuffleMapTask.$anonfun$runTask$3(ShuffleMapTask.scala:81)
at com.databricks.spark.util.ExecutorFrameProfiler$.record(ExecutorFrameProfiler.scala:110)
at org.apache.spark.scheduler.ShuffleMapTask.$anonfun$runTask$1(ShuffleMapTask.scala:81)
at com.databricks.spark.util.ExecutorFrameProfiler$.record(ExecutorFrameProfiler.scala:110)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:53)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:41)
at org.apache.spark.scheduler.Task.doRunTask(Task.scala:150)
at org.apache.spark.scheduler.Task.$anonfun$run$1(Task.scala:119)
at com.databricks.spark.util.ExecutorFrameProfiler$.record(ExecutorFrameProfiler.scala:110)
at org.apache.spark.scheduler.Task.run(Task.scala:91)
at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$13(Executor.scala:812)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1643)
at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$4(Executor.scala:815)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:23)
at com.databricks.spark.util.ExecutorFrameProfiler$.record(ExecutorFrameProfiler.scala:110)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:671)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.io.IOException: Connecting to /100.64.19.5:4048 failed in the last 4750 ms, fail this connection directly
at org.apache.spark.network.client.TransportClientFactory.createClient(TransportClientFactory.java:214)
at org.apache.spark.network.shuffle.ExternalBlockStoreClient.lambda$fetchBlocks$0(ExternalBlockStoreClient.java:101)
at org.apache.spark.network.shuffle.RetryingBlockFetcher.fetchAllOutstanding(RetryingBlockFetcher.java:153)
at org.apache.spark.network.shuffle.RetryingBlockFetcher.lambda$initiateRetry$0(RetryingBlockFetcher.java:181)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at io.netty.util.concurrent.FastThreadLocalRunnable.run(FastThreadLocalRunnable.java:30)
... 1 more
at org.apache.spark.scheduler.DAGScheduler.failJobAndIndependentStages(DAGScheduler.scala:2765)
at org.apache.spark.scheduler.DAGScheduler.$anonfun$abortStage$2(DAGScheduler.scala:2712)
at org.apache.spark.scheduler.DAGScheduler.$anonfun$abortStage$2$adapted(DAGScheduler.scala:2706)
at scala.collection.mutable.ResizableArray.foreach(ResizableArray.scala:62)
at scala.collection.mutable.ResizableArray.foreach$(ResizableArray.scala:55)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:49)
at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:2706)
at org.apache.spark.scheduler.DAGScheduler.handleTaskCompletion(DAGScheduler.scala:2263)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:2970)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2914)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2902)
at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:49)
Suppressed: [CIRCULAR REFERENCE: org.apache.spark.SparkException: Job aborted due to stage failure: ShuffleMapStage 46 (parquet at NativeMethodAccessorImpl.java:0) has failed the maximum allowable number of times: 4. Most recent failure reason: org.apache.spark.shuffle.FetchFailedException: Connecting to /100.64.19.5:4048 failed in the last 4750 ms, fail this connection directly at org.apache.spark.storage.ShuffleBlockFetcherIterator.throwFetchFailedException(ShuffleBlockFetcherIterator.scala:771) at org.apache.spark.storage.ShuffleBlockFetcherIterator.$anonfun$next$1(ShuffleBlockFetcherIterator.scala:686) at com.databricks.spark.util.ExecutorFrameProfiler$.record(ExecutorFrameProfiler.scala:110) at org.apache.spark.storage.ShuffleBlockFetcherIterator.next(ShuffleBlockFetcherIterator.scala:577) at org.apache.spark.storage.ShuffleBlockFetcherIterator.next(ShuffleBlockFetcherIterator.scala:70) at org.apache.spark.util.CompletionIterator.next(CompletionIterator.scala:29) at scala.collection.Iterator$$anon$11.nextCur(Iterator.scala:484) at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:490) at scala.collection.Iterator$$anon$10.hasNext(Iterator.scala:458) at org.apache.spark.util.CompletionIterator.hasNext(CompletionIterator.scala:31) at org.apache.spark.InterruptibleIterator.hasNext(InterruptibleIterator.scala:37) at scala.collection.Iterator$$anon$10.hasNext(Iterator.scala:458) at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage14.agg_doAggregateWithKeys_0$(Unknown Source) at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage14.sort_addToSorter_0$(Unknown Source) at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage14.processNext(Unknown Source) at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43) at org.apache.spark.sql.execution.WholeStageCodegenExec$$anon$1.hasNext(WholeStageCodegenExec.scala:757) at org.apache.spark.sql.execution.RowIteratorFromScala.advanceNext(RowIterator.scala:83) at org.apache.spark.sql.execution.joins.SortMergeFullOuterJoinScanner.advancedLeft(SortMergeJoinExec.scala:1088) at org.apache.spark.sql.execution.joins.SortMergeFullOuterJoinScanner.<init>(SortMergeJoinExec.scala:1078) at org.apache.spark.sql.execution.joins.SortMergeJoinExec.$anonfun$doExecute$1(SortMergeJoinExec.scala:222) at org.apache.spark.rdd.ZippedPartitionsRDD2.compute(ZippedPartitionsRDD.scala:125) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:380) at org.apache.spark.rdd.RDD.iterator(RDD.scala:344) at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:60) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:380) at org.apache.spark.rdd.RDD.iterator(RDD.scala:344) at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:60) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:380) at org.apache.spark.rdd.RDD.iterator(RDD.scala:344) at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:60) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:380) at org.apache.spark.rdd.RDD.iterator(RDD.scala:344) at org.apache.spark.shuffle.ShuffleWriteProcessor.write(ShuffleWriteProcessor.scala:59) at org.apache.spark.scheduler.ShuffleMapTask.$anonfun$runTask$3(ShuffleMapTask.scala:81) at com.databricks.spark.util.ExecutorFrameProfiler$.record(ExecutorFrameProfiler.scala:110) at org.apache.spark.scheduler.ShuffleMapTask.$anonfun$runTask$1(ShuffleMapTask.scala:81) at com.databricks.spark.util.ExecutorFrameProfiler$.record(ExecutorFrameProfiler.scala:110) at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:53) at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:41) at org.apache.spark.scheduler.Task.doRunTask(Task.scala:150) at org.apache.spark.scheduler.Task.$anonfun$run$1(Task.scala:119) at com.databricks.spark.util.ExecutorFrameProfiler$.record(ExecutorFrameProfiler.scala:110) at org.apache.spark.scheduler.Task.run(Task.scala:91) at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$13(Executor.scala:812) at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1643) at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$4(Executor.scala:815) at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:23) at com.databricks.spark.util.ExecutorFrameProfiler$.record(ExecutorFrameProfiler.scala:110) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:671) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748) Caused by: java.io.IOException: Connecting to /100.64.19.5:4048 failed in the last 4750 ms, fail this connection directly at org.apache.spark.network.client.TransportClientFactory.createClient(TransportClientFactory.java:214) at org.apache.spark.network.shuffle.ExternalBlockStoreClient.lambda$fetchBlocks$0(ExternalBlockStoreClient.java:101) at org.apache.spark.network.shuffle.RetryingBlockFetcher.fetchAllOutstanding(RetryingBlockFetcher.java:153) at org.apache.spark.network.shuffle.RetryingBlockFetcher.lambda$initiateRetry$0(RetryingBlockFetcher.java:181) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at io.netty.util.concurrent.FastThreadLocalRunnable.run(FastThreadLocalRunnable.java:30) ... 1 more ]
I am getting the following error due to stage materialization.
Connect timed out. Verify the connection properties. Make sure that an
instance of SQL Server is running on the host and accepting TCP/IP
connections at the port. Make sure that TCP connections to the port are not
blocked by a firewall.
Stage materialization may happen due to connection issues at intermediate stages where a connection required to be established may have broken.
In case it helps: Are you using .checkpoint or .local_checkpoint? I was facing a similar issue (stage materialization) and found it helpful:
If this problem persists, you may consider using rdd.checkpoint() instead, which is slower than local checkpointing but more fault-tolerant.
I'm using PySpark with this configuration:
configuration_cluster = (
SparkConf()
.set("spark.executor.cores", "4")
.set("spark.dynamicAllocation.maxExecutors", "20")
.set("spark.executor.memory", "20g")
.set("spark.driver.memory", "16g")
.set("spark.driver.maxResultSize", "8g")
.set("spark.sql.shuffle.partitions", "200")
.set("spark.kryoserializer.buffer.max", "1g")
.set("spark.dynamicAllocation.enabled", "true")
.set("spark.network.timeout", "180000")
.set("spark.sql.execution.arrow.pyspark.enabled", "true")
)
spark = (
SparkSession.builder.appName("myapp18398")
.config(conf=configuration_cluster)
.master("yarn")
.enableHiveSupport()
.getOrCreate()
)
Loading data (it's a big dataframe with over 11 million observation and many variables) and then using a simple show(1) it works without any problems
osm = spark.read.parquet(path)
osm.show(1)
but then if I filter and I use show(1) again it returns an error, as when the memory is not big enough.
osm = osm.select("id", "name", "location", "country")\
.dropDuplicates()
osm.show(1)
here the error:
[Stage 29:=> (1 + 9) / 56]21/04/14 14:30:32 120 ERROR TaskSetManager: Task 29 in stage 29.0 failed 4 times; aborting job
Py4JJavaError: An error occurred while calling o757.showString.
: org.apache.spark.SparkException: Job aborted due to stage failure: Task 29 in stage 29.0 failed 4 times, most recent failure: Lost task 29.3 in stage 29.0 (TID 549, bdp03node12.mit01.ecb.de, executor 20): org.apache.spark.sql.execution.QueryExecutionException: Encounter error while reading parquet files. One possible cause: Parquet column cannot be converted in the corresponding files. Details:
at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.nextIterator(FileScanRDD.scala:195)
at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.hasNext(FileScanRDD.scala:103)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage1.processNext(Unknown Source)
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anonfun$11$$anon$1.hasNext(WholeStageCodegenExec.scala:624)
at org.apache.spark.sql.execution.columnar.CachedRDDBuilder$$anonfun$1$$anon$1.hasNext(InMemoryRelation.scala:131)
at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:221)
at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299)
at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1176)
at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1167)
at org.apache.spark.storage.BlockManager.doPut(BlockManager.scala:1102)
at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1167)
at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:893)
at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:335)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:286)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:99)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:55)
at org.apache.spark.scheduler.Task.run(Task.scala:121)
at org.apache.spark.executor.Executor$TaskRunner$$anonfun$11.apply(Executor.scala:407)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1408)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:413)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: org.apache.parquet.io.ParquetDecodingException: Can not read value at 1 in block 0 in file /part-00000-f05ab4fb-cb54-4c37-b924-06968e4df455-c000.snappy.parquet
at org.apache.parquet.hadoop.InternalParquetRecordReader.nextKeyValue(InternalParquetRecordReader.java:223)
at org.apache.parquet.hadoop.ParquetRecordReader.nextKeyValue(ParquetRecordReader.java:213)
at org.apache.spark.sql.execution.datasources.RecordReaderIterator.hasNext(RecordReaderIterator.scala:39)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409)
at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.hasNext(FileScanRDD.scala:103)
at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.nextIterator(FileScanRDD.scala:183)
... 35 more
Caused by: java.lang.ClassCastException: org.apache.spark.sql.catalyst.expressions.MutableAny cannot be cast to org.apache.spark.sql.catalyst.expressions.MutableLong
at org.apache.spark.sql.catalyst.expressions.SpecificInternalRow.setLong(SpecificInternalRow.scala:283)
at org.apache.spark.sql.execution.datasources.parquet.ParquetRowConverter$RowUpdater.setLong(ParquetRowConverter.scala:169)
at org.apache.spark.sql.execution.datasources.parquet.ParquetPrimitiveConverter.addLong(ParquetRowConverter.scala:87)
at org.apache.parquet.column.impl.ColumnReaderImpl$2$4.writeValue(ColumnReaderImpl.java:275)
at org.apache.parquet.column.impl.ColumnReaderImpl.writeCurrentValueToConverter(ColumnReaderImpl.java:372)
at org.apache.parquet.io.RecordReaderImplementation.read(RecordReaderImplementation.java:407)
at org.apache.parquet.hadoop.InternalParquetRecordReader.nextKeyValue(InternalParquetRecordReader.java:198)
... 40 more
Driver stacktrace:
at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1890)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1878)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1877)
at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)
at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1877)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:929)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:929)
at scala.Option.foreach(Option.scala:257)
at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:929)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:2111)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2060)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2049)
at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:49)
at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:740)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2081)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2102)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2121)
at org.apache.spark.sql.execution.SparkPlan.executeTake(SparkPlan.scala:365)
at org.apache.spark.sql.execution.CollectLimitExec.executeCollect(limit.scala:38)
at org.apache.spark.sql.Dataset.org$apache$spark$sql$Dataset$$collectFromPlan(Dataset.scala:3383)
at org.apache.spark.sql.Dataset$$anonfun$head$1.apply(Dataset.scala:2544)
at org.apache.spark.sql.Dataset$$anonfun$head$1.apply(Dataset.scala:2544)
at org.apache.spark.sql.Dataset$$anonfun$53.apply(Dataset.scala:3364)
at org.apache.spark.sql.execution.SQLExecution$$anonfun$withNewExecutionId$1.apply(SQLExecution.scala:78)
at org.apache.spark.sql.execution.SQLExecution$.withSQLConfPropagated(SQLExecution.scala:125)
at org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:73)
at org.apache.spark.sql.Dataset.withAction(Dataset.scala:3363)
at org.apache.spark.sql.Dataset.head(Dataset.scala:2544)
at org.apache.spark.sql.Dataset.take(Dataset.scala:2758)
at org.apache.spark.sql.Dataset.getRows(Dataset.scala:254)
at org.apache.spark.sql.Dataset.showString(Dataset.scala:291)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:244)
at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357)
at py4j.Gateway.invoke(Gateway.java:282)
at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:132)
at py4j.commands.CallCommand.execute(CallCommand.java:79)
at py4j.GatewayConnection.run(GatewayConnection.java:238)
at java.lang.Thread.run(Thread.java:748)
Caused by: org.apache.spark.sql.execution.QueryExecutionException: Encounter error while reading parquet files. One possible cause: Parquet column cannot be converted in the corresponding files. Details:
at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.nextIterator(FileScanRDD.scala:195)
at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.hasNext(FileScanRDD.scala:103)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage1.processNext(Unknown Source)
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anonfun$11$$anon$1.hasNext(WholeStageCodegenExec.scala:624)
at org.apache.spark.sql.execution.columnar.CachedRDDBuilder$$anonfun$1$$anon$1.hasNext(InMemoryRelation.scala:131)
at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:221)
at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299)
at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1176)
at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1167)
at org.apache.spark.storage.BlockManager.doPut(BlockManager.scala:1102)
at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1167)
at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:893)
at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:335)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:286)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:99)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:55)
at org.apache.spark.scheduler.Task.run(Task.scala:121)
at org.apache.spark.executor.Executor$TaskRunner$$anonfun$11.apply(Executor.scala:407)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1408)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:413)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
... 1 more
Caused by: org.apache.parquet.io.ParquetDecodingException: Can not read value at 1 in block 0 in file hdfs:/f05ab4fb-cb54-4c37-b924-06968e4df455-c000.snappy.parquet
at org.apache.parquet.hadoop.InternalParquetRecordReader.nextKeyValue(InternalParquetRecordReader.java:223)
at org.apache.parquet.hadoop.ParquetRecordReader.nextKeyValue(ParquetRecordReader.java:213)
at org.apache.spark.sql.execution.datasources.RecordReaderIterator.hasNext(RecordReaderIterator.scala:39)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409)
at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.hasNext(FileScanRDD.scala:103)
at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.nextIterator(FileScanRDD.scala:183)
... 35 more
Caused by: java.lang.ClassCastException: org.apache.spark.sql.catalyst.expressions.MutableAny cannot be cast to org.apache.spark.sql.catalyst.expressions.MutableLong
at org.apache.spark.sql.catalyst.expressions.SpecificInternalRow.setLong(SpecificInternalRow.scala:283)
at org.apache.spark.sql.execution.datasources.parquet.ParquetRowConverter$RowUpdater.setLong(ParquetRowConverter.scala:169)
at org.apache.spark.sql.execution.datasources.parquet.ParquetPrimitiveConverter.addLong(ParquetRowConverter.scala:87)
at org.apache.parquet.column.impl.ColumnReaderImpl$2$4.writeValue(ColumnReaderImpl.java:275)
at org.apache.parquet.column.impl.ColumnReaderImpl.writeCurrentValueToConverter(ColumnReaderImpl.java:372)
at org.apache.parquet.io.RecordReaderImplementation.read(RecordReaderImplementation.java:407)
at org.apache.parquet.hadoop.InternalParquetRecordReader.nextKeyValue(InternalParquetRecordReader.java:198)
... 40 more
Py4JJavaError Traceback (most recent call last)
in engine
----> 1 osm.show(1)
/opt/cloudera/parcels/CDH/lib/spark/python/pyspark/sql/dataframe.py in show(self, n, truncate, vertical)
376 """
377 if isinstance(truncate, bool) and truncate:
--> 378 print(self._jdf.showString(n, 20, vertical))
379 else:
380 print(self._jdf.showString(n, int(truncate), vertical))
/conda/miniconda3/envs/python3.6.8/lib/python3.6/site-packages/py4j/java_gateway.py in __call__(self, *args)
1255 answer = self.gateway_client.send_command(command)
1256 return_value = get_return_value(
-> 1257 answer, self.gateway_client, self.target_id, self.name)
1258
1259 for temp_arg in temp_args:
/opt/cloudera/parcels/CDH/lib/spark/python/pyspark/sql/utils.py in deco(*a, **kw)
61 def deco(*a, **kw):
62 try:
---> 63 return f(*a, **kw)
64 except py4j.protocol.Py4JJavaError as e:
65 s = e.java_exception.toString()
It can't be a memory problem as with the whole dataframe it works, right? What are the problems?
I work on regression on Apache Spark. And I get everytime same error. I can't solve it.
model = LinearRegression(featuresCol = 'features', labelCol='label').fit(df)
---------------------------------------------------------------------------
Py4JJavaError Traceback (most recent call last)
<ipython-input-80-3156cdf2ca47> in <module>
----> 1 model = lr.fit(df)
C:\ProgramData\Anaconda3\lib\site-packages\pyspark\ml\base.py in fit(self, dataset, params)
130 return self.copy(params)._fit(dataset)
131 else:
--> 132 return self._fit(dataset)
133 else:
134 raise ValueError("Params must be either a param map or a list/tuple of param maps, "
C:\ProgramData\Anaconda3\lib\site-packages\pyspark\ml\wrapper.py in _fit(self, dataset)
293
294 def _fit(self, dataset):
--> 295 java_model = self._fit_java(dataset)
296 model = self._create_model(java_model)
297 return self._copyValues(model)
C:\ProgramData\Anaconda3\lib\site-packages\pyspark\ml\wrapper.py in _fit_java(self, dataset)
290 """
291 self._transfer_params_to_java()
--> 292 return self._java_obj.fit(dataset._jdf)
293
294 def _fit(self, dataset):
C:\ProgramData\Anaconda3\lib\site-packages\py4j\java_gateway.py in __call__(self, *args)
1255 answer = self.gateway_client.send_command(command)
1256 return_value = get_return_value(
-> 1257 answer, self.gateway_client, self.target_id, self.name)
1258
1259 for temp_arg in temp_args:
C:\ProgramData\Anaconda3\lib\site-packages\pyspark\sql\utils.py in deco(*a, **kw)
61 def deco(*a, **kw):
62 try:
---> 63 return f(*a, **kw)
64 except py4j.protocol.Py4JJavaError as e:
65 s = e.java_exception.toString()
C:\ProgramData\Anaconda3\lib\site-packages\py4j\protocol.py in get_return_value(answer, gateway_client, target_id, name)
326 raise Py4JJavaError(
327 "An error occurred while calling {0}{1}{2}.\n".
--> 328 format(target_id, ".", name), value)
329 else:
330 raise Py4JError(
Py4JJavaError: An error occurred while calling o762.fit.
: org.apache.spark.SparkException: Job aborted due to stage failure: Task 3 in stage 66.0 failed 1 times, most recent failure: Lost task 3.0 in stage 66.0 (TID 133, localhost, executor driver): scala.MatchError: [null,1.0,[34.0,147.0,249.0,2006.0,7.0,30.0,38.0,2.0]] (of class org.apache.spark.sql.catalyst.expressions.GenericRowWithSchema)
at org.apache.spark.ml.regression.LinearRegression.$anonfun$train$2(LinearRegression.scala:325)
at scala.collection.Iterator$$anon$10.next(Iterator.scala:459)
at scala.collection.Iterator.foreach(Iterator.scala:941)
at scala.collection.Iterator.foreach$(Iterator.scala:941)
at scala.collection.AbstractIterator.foreach(Iterator.scala:1429)
at scala.collection.TraversableOnce.foldLeft(TraversableOnce.scala:160)
at scala.collection.TraversableOnce.foldLeft$(TraversableOnce.scala:158)
at scala.collection.AbstractIterator.foldLeft(Iterator.scala:1429)
at scala.collection.TraversableOnce.aggregate(TraversableOnce.scala:217)
at scala.collection.TraversableOnce.aggregate$(TraversableOnce.scala:217)
at scala.collection.AbstractIterator.aggregate(Iterator.scala:1429)
at org.apache.spark.rdd.RDD.$anonfun$treeAggregate$3(RDD.scala:1145)
at org.apache.spark.rdd.RDD.$anonfun$treeAggregate$5(RDD.scala:1146)
at org.apache.spark.rdd.RDD.$anonfun$mapPartitions$2(RDD.scala:801)
at org.apache.spark.rdd.RDD.$anonfun$mapPartitions$2$adapted(RDD.scala:801)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:99)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:55)
at org.apache.spark.scheduler.Task.run(Task.scala:121)
at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:411)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Driver stacktrace:
at org.apache.spark.scheduler.DAGScheduler.failJobAndIndependentStages(DAGScheduler.scala:1889)
at org.apache.spark.scheduler.DAGScheduler.$anonfun$abortStage$2(DAGScheduler.scala:1877)
at org.apache.spark.scheduler.DAGScheduler.$anonfun$abortStage$2$adapted(DAGScheduler.scala:1876)
at scala.collection.mutable.ResizableArray.foreach(ResizableArray.scala:62)
at scala.collection.mutable.ResizableArray.foreach$(ResizableArray.scala:55)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:49)
at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1876)
at org.apache.spark.scheduler.DAGScheduler.$anonfun$handleTaskSetFailed$1(DAGScheduler.scala:926)
at org.apache.spark.scheduler.DAGScheduler.$anonfun$handleTaskSetFailed$1$adapted(DAGScheduler.scala:926)
at scala.Option.foreach(Option.scala:274)
at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:926)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:2110)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2059)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2048)
at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:49)
at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:737)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2061)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2158)
at org.apache.spark.rdd.RDD.$anonfun$fold$1(RDD.scala:1098)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112)
at org.apache.spark.rdd.RDD.withScope(RDD.scala:363)
at org.apache.spark.rdd.RDD.fold(RDD.scala:1092)
at org.apache.spark.rdd.RDD.$anonfun$treeAggregate$1(RDD.scala:1161)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112)
at org.apache.spark.rdd.RDD.withScope(RDD.scala:363)
at org.apache.spark.rdd.RDD.treeAggregate(RDD.scala:1137)
at org.apache.spark.ml.optim.WeightedLeastSquares.fit(WeightedLeastSquares.scala:105)
at org.apache.spark.ml.regression.LinearRegression.$anonfun$train$1(LinearRegression.scala:345)
at org.apache.spark.ml.util.Instrumentation$.$anonfun$instrumented$1(Instrumentation.scala:183)
at scala.util.Try$.apply(Try.scala:213)
at org.apache.spark.ml.util.Instrumentation$.instrumented(Instrumentation.scala:183)
at org.apache.spark.ml.regression.LinearRegression.train(LinearRegression.scala:319)
at org.apache.spark.ml.regression.LinearRegression.train(LinearRegression.scala:176)
at org.apache.spark.ml.Predictor.fit(Predictor.scala:118)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:244)
at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357)
at py4j.Gateway.invoke(Gateway.java:282)
at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:132)
at py4j.commands.CallCommand.execute(CallCommand.java:79)
at py4j.GatewayConnection.run(GatewayConnection.java:238)
at java.lang.Thread.run(Thread.java:748)
Caused by: scala.MatchError: [null,1.0,[34.0,147.0,249.0,2006.0,7.0,30.0,38.0,2.0]] (of class org.apache.spark.sql.catalyst.expressions.GenericRowWithSchema)
at org.apache.spark.ml.regression.LinearRegression.$anonfun$train$2(LinearRegression.scala:325)
at scala.collection.Iterator$$anon$10.next(Iterator.scala:459)
at scala.collection.Iterator.foreach(Iterator.scala:941)
at scala.collection.Iterator.foreach$(Iterator.scala:941)
at scala.collection.AbstractIterator.foreach(Iterator.scala:1429)
at scala.collection.TraversableOnce.foldLeft(TraversableOnce.scala:160)
at scala.collection.TraversableOnce.foldLeft$(TraversableOnce.scala:158)
at scala.collection.AbstractIterator.foldLeft(Iterator.scala:1429)
at scala.collection.TraversableOnce.aggregate(TraversableOnce.scala:217)
at scala.collection.TraversableOnce.aggregate$(TraversableOnce.scala:217)
at scala.collection.AbstractIterator.aggregate(Iterator.scala:1429)
at org.apache.spark.rdd.RDD.$anonfun$treeAggregate$3(RDD.scala:1145)
at org.apache.spark.rdd.RDD.$anonfun$treeAggregate$5(RDD.scala:1146)
at org.apache.spark.rdd.RDD.$anonfun$mapPartitions$2(RDD.scala:801)
at org.apache.spark.rdd.RDD.$anonfun$mapPartitions$2$adapted(RDD.scala:801)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:99)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:55)
at org.apache.spark.scheduler.Task.run(Task.scala:121)
at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:411)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
... 1 more
What is the reason? df is dataframe. How can I solve it? I tried it in my computer and databricks, the result is same. My dataframe is features=[8 numbers], label= one number like [2.0,92.0,1.0,2002.0,9.0,37.0,2.0,2.0] and 99.4