I am not sure, whether this question relates to Linux in particular:
I use the tsp command to run small batchs of processes
tsp ./myScript.sh
which is then running
ID State Output E-Level Times(r/u/s) Command [run=1/5]
1 running /tmp/ts-out.woHIKK ./myScript.sh
but how can I kill this process? The only -K killing option with tsp seems to wipe the whole tsp server, it could be done using
ps -aux | grep myScript.sh | kill {}
But isn't there any tsp way to do it? It sounds to me like an obvious option.
You can use kill:
kill $(tsp -p 1)
where 1 is the job ID.
Related
I'm pretty inexperienced with Linux bash. That being said, I have a CentOS7 machine that runs a COTS application server. This application server runs other processes that sometimes hang. Since I have no control over the start of these processes, I'm looking for a script that runs every 2 minutes that kills processes of the name "spicer" that have been running for longer than 10 minutes. I've looked around and have only been able to find answers for processes that are run and owned by me.
I use the command ps -eo pid, command,etime | grep spicer to get all the spicer processes. The output of this command looks like:
18216 spicer -l/opt/otmm-10.5/Spi 14:20
18415 spicer -l/opt/otmm-10.5/Spi 11:49
etc...
18588 grep --color=auto spicer
I don't know if there's a way to parse this directly in bash. I'm also not well-versed at all in other Linux tools. I know that awk (or gawk) could possibly help.
EDIT
I have no control over the data that the process is working on.
What about wrapping the executable of spicer and start it using the timeout command? Let's say it is installed in /usr/bin/spicer. Then issue:
cp /usr/bin/spicer{,.orig}
echo '#!/bin/bash' > /usr/bin/spicer
echo 'timeout 10m spicer.orig "$#"' >> /usr/bin/spicer
Another approach would be to create a cronjob defintion into /etc/cron.d/kill_spicer. Like this:
* * * * * root kill $(ps --no-headers -C spicer -o pid,etimes | awk '$2>=600{print $1}')
The cronjob will get executed minutely and uses ps to obtain a list of spicer processes that run longer than 10minutes and passes them to kill.
Probably you even want kill -9 if the process is hanging.
You can use the -C option of ps to select processes by name.
ps --no-headers -C spicer -o pid,etime
Then you can use cut to filter the results, if the spacing is consistent. On my system the pid field takes up 8 characters, so I'd use
kill $(ps --no-headers -C spicer -o pid,etime | cut -c-8)
If the spacing is inconsistent (but if so, what kind of messed up ps are you using? :-P), you can use awk { print $1 } instead of cut.
I had given a job in a remote server yesterday from my home. The command was
sh run.sh >& out &
The run.sh will excute a program (average.f) more than 1000 times recurssively.
Today, in my office, I found some mistake in my run.sh. So I would like to kill it.
I used top command, but it is not showing the run.sh. It is only showing average.f. So, once, I killed it with kill PID, it is again starting average.f with another PID and producing outputs.
ps -u is not showing either run.sh or average.f.
Can anybody please help me how to kill this job.
find your job id with the process or application name . example is given below - I am killing java process here
ps -aef|grep java
// the above command will give you pid, now fire below command to kill that job
kill -9 pid
// here pid is a number which you get from the first command
ps -ef | grep run.sh | grep -v grep | awk '{print $2}' | xargs kill -9
Use pstree(1) (probably as pstree -p) to list the process tree hierarchy, then kill(1) (first with -TERM, then with -QUIT, and if that does not work, at last with -KILL) your topmost shell process running run.sh (or else the few "higher" processes). Perhaps use killall(1) or pidof(1) (or pgrep(1) or pkill)
You might want to kill the process group, with a negative pid.
You should never at first kill -KILL a process (but only at last resort); some programs (e.g. database servers, sophisticated numerical computations with application checkpointing, ...) have installed a SIGTERM or SIGQUIT signal handler to clean up their mess and e.g. save some state (on the disk) in a sane way. If you kill -KILL them, they could leave the mess uncleaned (since SIGKILL cannot be caught, see signal(7)....)
BTW, you should use ps auxw to list all processes, read ps(1)
While configuring/installing Hadoop cluster we often need to kill a Java Process/Daemon.
We see Java Processes/Daemons running with jps command.
Usually we kill a Java process with its PID. E.g.
kill -9 112224
It is little bit difficult to type the PID. Is there a way to kill the process by its name? In a single command?
Here is the command to kill the Java process by is Process Name instead of its ProcessID.
kill -9 `jps | grep "DataNode" | cut -d " " -f 1`
Let me explain more, about the benefit of this command. Lets say you are working with Hadoop cluster. Its often required that you check java daemons running with jps command. Lets say when you give this command on worker nodes, you see following output.
1915 NodeManager
18119 DataNode
17680 Jps
Usually, if we want to kill DataNode process, we would use following command
kill -9 18119
But, it is little bit difficult to type the PID, to use kill command. By using the command, given in this answer, it is easy to write the name of the process. We can also prepare shell scripts to kill commonly used deamons in hadoop cluster,
or we can prepare one shell script and can use parameter as process name.
How about using
killall firefox
jps -l has helped me killing the process
kill `jps -l | grep "myjarname.jar" | cut -d " " -f 1`
To get the process id of that java process run
netstat -tuplen
Process ID (PID) of that process whom you want to kill and run
kill -9 PID
Using jobs I know the process is running.
bash-4.2$ jobs
[1]+ Running test.sh &
I wanted it to be set NOHUP so that it won't be killed when I exit. I used
disown
and
bash-4.2$ jobs
shows nothing. I'm not sure if the process is set NOHUP or not. I'm curious about this because after I read the manual it says
disown -h
should be used to set NOHUP.
Edit
I don't think the link Find the Process run by nohup command helps. The question is different than that one.
I'm gonna restate my problem. I run a program without nohup, and later I wanted it to be set NOHUP so that it won't be killed when I exit the system. So I used disown, but later I found the manual says I should have used disown -h to set NOHUP. I want to check if my process is set NOHUP or not successfully. If not, what can I do to set it to be NOHUP?
UPDATE
I know two ways my be helpful:
1) Whenever a process is running over nohup It writes output on ~/nohup.out . So you can check this file by running command find -cmin 2. It shows you if nohup.out is changing each 2 seconds or not.
If it is changing you would understand that sth is running by nohup command, after that you can check it with lsof and continue your checking...
2) If you logout from specific user andgo to tty then do ps aux | grep <user> or ps aux | grep ? then you can understand that is running with nohup command... because there is no pts then it shows you ? instead...
useful command:
ps aux | grep <program> | awk -F" " '{print $7}'
Hope to be helpful
I'm running a nohup process on the server. When I try to kill it my putty console closes instead.
this is how I try to find the process ID:
ps -ef |grep nohup
this is the command to kill
kill -9 1787 787
When using nohup and you put the task in the background, the background operator (&) will give you the PID at the command prompt. If your plan is to manually manage the process, you can save that PID and use it later to kill the process if needed, via kill PID or kill -9 PID (if you need to force kill). Alternatively, you can find the PID later on by ps -ef | grep "command name" and locate the PID from there. Note that nohup keyword/command itself does not appear in the ps output for the command in question.
If you use a script, you could do something like this in the script:
nohup my_command > my.log 2>&1 &
echo $! > save_pid.txt
This will run my_command saving all output into my.log (in a script, $! represents the PID of the last process executed). The 2 is the file descriptor for standard error (stderr) and 2>&1 tells the shell to route standard error output to the standard output (file descriptor 1). It requires &1 so that the shell knows it's a file descriptor in that context instead of just a file named 1. The 2>&1 is needed to capture any error messages that normally are written to standard error into our my.log file (which is coming from standard output). See I/O Redirection for more details on handling I/O redirection with the shell.
If the command sends output on a regular basis, you can check the output occasionally with tail my.log, or if you want to follow it "live" you can use tail -f my.log. Finally, if you need to kill the process, you can do it via:
kill -9 `cat save_pid.txt`
rm save_pid.txt
I am using red hat linux on a VPS server (and via SSH - putty), for me the following worked:
First, you list all the running processes:
ps -ef
Then in the first column you find your user name; I found it the following three times:
One was the SSH connection
The second was an FTP connection
The last one was the nohup process
Then in the second column you can find the PID of the nohup process and you only type:
kill PID
(replacing the PID with the nohup process's PID of course)
And that is it!
I hope this answer will be useful for someone I'm also very new to bash and SSH, but found 95% of the knowledge I need here :)
suppose i am running ruby script in the background with below command
nohup ruby script.rb &
then i can get the pid of above background process by specifying command name. In my case command is ruby.
ps -ef | grep ruby
output
ubuntu 25938 25742 0 05:16 pts/0 00:00:00 ruby test.rb
Now you can easily kill the process by using kill command
kill 25938
jobs -l should give you the pid for the list of nohup processes.
kill (-9) them gently.
;)
You could try
kill -9 `pgrep [command name]`
Suppose you are executing a java program with nohup you can get java process id by
`ps aux | grep java`
output
xxxxx 9643 0.0 0.0 14232 968 pts/2
then you can kill the process by typing
sudo kill 9643
or lets say that you need to kill all the java processes then just use
sudo killall java
this command kills all the java processes. you can use this with process. just give the process name at the end of the command
sudo killall {processName}
If your application always uses the same port, you can kill all the processes in that port like this.
kill -9 $(lsof -t -i:8080)
This works in Ubuntu
Type this to find out the PID
ps aux | grep java
All the running process regarding to java will be shown
In my case is
johnjoe 3315 9.1 4.0 1465240 335728 ? Sl 09:42 3:19 java -jar batch.jar
Now kill it kill -9 3315
The zombie process finally stopped.
when you create a job in nohup it will tell you the process ID !
nohup sh test.sh &
the output will show you the process ID like
25013
you can kill it then :
kill 25013
I started django server with the following command.
nohup manage.py runserver <localhost:port>
This works on CentOS:
:~ ns$netstat -ntlp
:~ ns$kill -9 PID
This works for mi fine on mac
kill -9 `ps -ef | awk '/nohup/{ print \$2 }'`
I often do this way. Try this way :
ps aux | grep script_Name
Here, script_Name could be any script/file run by nohup.
This command gets you a process ID. Then use this command below to kill the script running on nohup.
kill -9 1787 787
Here, 1787 and 787 are Process ID as mentioned in the question as an example.
This should do what was intended in the question.
If you are unaware of the PID, then first find it using TOP command
top -U userid
PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND
You will get the PID using top, then perform the kill operation.
$ kill -9 <PID>
Today I met the same problem. And since it was a long time ago, I totally forgot which command I used and when. I tried three methods:
Using the STIME shown in ps -ef command. This shows the time you start your process, and it's very likely that you nohup you command just before you close ssh(depends on you) . Unfortunately I don't think the latest command is the command I run using nohup, so this doesn't work for me.
Second is the PPID, also shown in ps -ef command. It means Parent Process ID, the ID of process that creates the process. The ppid is 1 in ubuntu for process that using nohup to run. Then you can use ps --ppid "1" to get the list, and check TIME(the total CPU time your process use) or CMD to find the process's PID.
Use lsof -i:port if the process occupy some ports, and you will get the command. Then just like the answer above, use ps -ef | grep command and you will get the PID.
Once you find the PID of the process, then can use kill pid to terminal the process.
About losing your putty: often the ps ... | awk/grep/perl/... process gets matched, too! So the old school trick is like this
ps -ef | grep -i [n]ohup
That way the regex search doesn't match the regex search process!
if you are on a remote server, check memory usage with top , and find your process and its ID. After that, just execute kill [your process ID] .