This is in reference to running the WRF model in my system. I am trying to run the file plotgrids.ncl to ensure that the domain is in the right location before running geogrid.exe . Running the following command in my terminal(ubuntu)
ncl util/plotgrids.ncl
gives me the following error:
ncl: /lib/x86_64-linux-gnu/libssl.so.10: version 'libssl.so.10' not found (required by ncl)
ncl: /lib/x86_64-linux-gnu/libcrypto.so.10: version 'libcrypto.so.10' not found (required by ncl)
at one NCL 6.4.0 installation at Ubuntu 10.10 the solution was
searching a compat-openssl10 package, as
compat-openssl10-1.0.2j-9.fc26.x86_64.rpm
turn it into a .deb package by doing this steps:
apt-get install libdpkg-perl
alien compat-openssl10-1.0.2j-9.fc26.x86_64.rpm
dpkg -i compat-openssl10_1.0.2j-10_amd64.deb
find / -name libssl.so.*
will now show it at /usr/lib/ libssl.so.10
NCL will still complain about GLIBC version
at this case that was solved by editing
vi /etc/apt/sources.list
:%s/maverick/wily/g
apt-get update
apt-get install libc6
this still shows as 2.15 with
ldd --version
however now the test works with
ng4ex xy01n -clean
for Ubuntu 16 please check help given by NCL forum at
mailman.ucar.edu/pipermail/ncl-install/2017-November/thread.html
as resumed here:
http://conda.pydata.org/miniconda.html
used Python 3.6 Linux 64-bit (bash installer)
cd /home/user/Downloads/
chmod +x Miniconda2-latest-Linux-x86_64.sh
./Miniconda2-latest-Linux-x86_64.sh
conda -V
conda 4.3.30
http://ncl.ucar.edu/Download/conda.shtml
conda create -n ncl_stable -c conda-forge ncl=6.4.0 gsl
root#hostname:~# source activate ncl_stable
(ncl_stable) root#hostname:~# ncl -V
6.4.0
ng4ex xy05n -clean -W png
it works!
outside conda (ncl_stable)
ng4ex
The program 'ng4ex' is currently not installed. You can install it by:
sudo su
vi /etc/apt/sources.list
add at the end
deb http://http.us.debian.org/debian/ testing non-free contrib main
exit editor
apt-get update
apt install libncarg-bin
I am trying to get a Python script to run on the linux server I'm connected to via ssh. The script uses mysqldb. I have all the other components I need, but when I try to install mySQLdb via setuptools like so:,
python setup.py install
I get the following error report related to the mysql_config command.
sh: mysql_config: command not found
Traceback (most recent call last):
File "setup.py", line 15, in <module>
metadata, options = get_config()
File "/usr/lib/python2.5/MySQL-python-1.2.3/setup_posix.py", line 43, in get_config
libs = mysql_config("libs_r")
File "/usr/lib/python2.5/MySQL-python-1.2.3/setup_posix.py", line 24, in mysql_config
raise EnvironmentError("%s not found" % (mysql_config.path,))
EnvironmentError: mysql_config not found
Has anyone else encountered this error and if so how did you resolve it/what can I do to successfully install mysqldb?
mySQLdb is a python interface for mysql, but it is not mysql itself. And apparently mySQLdb needs the command 'mysql_config', so you need to install that first.
Can you confirm that you did or did not install mysql itself, by running "mysql" from the shell? That should give you a response other than "mysql: command not found".
Which linux distribution are you using? Mysql is pre-packaged for most linux distributions. For example, for debian / ubuntu, installing mysql is as easy as
sudo apt-get install mysql-server
mysql-config is in a different package, which can be installed from (again, assuming debian / ubuntu):
sudo apt-get install libmysqlclient-dev
if you are using mariadb, the drop in replacement for mysql, then run
sudo apt-get install libmariadbclient-dev
Reference:
https://github.com/JudgeGirl/Judge-sender/issues/4#issuecomment-186542797
I was installing python-mysql on Ubuntu 12.04 using
pip install mysql-python
First I had the same problem:
Not Found "mysql_config"
This worked for me
$ sudo apt-get install libmysqlclient-dev
Then I had this problem:
...
_mysql.c:29:20: error fatal: Python.h: No existe el archivo o el directorio
compilación terminada.
error: command 'gcc' failed with exit status 1
Then I tried with
apt-get install python-dev
(If you're using python3, install python3-dev instead.)
And then I was happy :)
pip install mysql-python
Installing collected packages: mysql-python
Running setup.py install for mysql-python
building '_mysql' extension
gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -Dversion_info=(1,2,4,'beta',4) -D__version__=1.2.4b4 -I/usr/include/mysql -I/usr/include/python2.7 -c _mysql.c -o build/temp.linux-x86_64-2.7/_mysql.o -DBIG_JOINS=1 -fno-strict-aliasing -g
In file included from _mysql.c:44:0:
/usr/include/mysql/my_config.h:422:0: aviso: se redefinió "HAVE_WCSCOLL" [activado por defecto]
/usr/include/python2.7/pyconfig.h:890:0: nota: esta es la ubicación de la definición previa
gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-x86_64-2.7/_mysql.o -L/usr/lib/x86_64-linux-gnu -lmysqlclient_r -lpthread -lz -lm -lrt -ldl -o build/lib.linux-x86_64-2.7/_mysql.so
Successfully installed mysql-python
Cleaning up...
(Specific to Mac OS X)
I have tried a lot of things, but these set of commands finally worked for me.
Install mysql
brew install mysql
brew unlink mysql
brew install mysql-connector-c
Add the mysql bin folder to PATH
export PATH=/usr/local/Cellar/mysql/8.0.11/bin:$PATH
mkdir /usr/local/Cellar/lib/
Create a symlink
sudo ln -s /usr/local/Cellar/mysql/8.0.11/lib/libmysqlclient.21.dylib /usr/local/Cellar/lib/libmysqlclient.21.dylib
brew reinstall openssl (source)
Finally, install mysql-client
LIBRARY_PATH=$LIBRARY_PATH:/usr/local/opt/openssl/lib/ pip install mysqlclient
Update:
In case this doesn't work, #vinyll suggests to run brew link mysql before step 8.
On Red Hat I had to do
sudo yum install mysql-devel gcc gcc-devel python-devel
sudo easy_install mysql-python
Then it worked.
On python 3.5.2 + any future version
sudo apt-get install libmysqlclient-dev python-dev
The below worked for me on Ubuntu 12.04 LTS:
apt-get install libmysqlclient-dev python-dev
All though it worked, i still went ahead to do the below:
export PATH=$PATH:/usr/local/mysql/bin/
I got the same error while trying to install mysql-python.
This is how I fixed it.
sudo PATH=/usr/local/mysql/bin/:$PATH pip install mysql-python
The problem was that the installer could not find the mysql_config in the default path. Now it can ..and it worked..
15 warnings generated.
clang -bundle -undefined dynamic_lookup -Wl,-F. build/temp.macosx-10.8-intel-2.7/_mysql.o -L/usr/local/mysql/lib -lmysqlclient_r -lz -lm -lmygcc -o build/lib.macosx-10.8-intel-2.7/_mysql.so -arch x86_64
Successfully installed mysql-python
Cleaning up...
Hope this helps.
Thanks.
I fixed this problem with the following steps:
sudo apt-get install libmysqlclient-dev
sudo apt-get install python-dev
sudo python setup.py install
The commands (mysql too) mPATH might be missing.
export PATH=$PATH:/usr/local/mysql/bin/
Step1:-Install Python3 & Python3-dev Both
sudo apt-get install python3 python3-dev
Step2:- Install Python & Mysql Connector
sudo apt-get install libmysqlclient-dev
step3:- Install python mysql client
sudo apt-get install mysqlclient
This will Solve your Problem
The package libmysqlclient-dev is deprecated, so use the below command to fix it.
Package libmysqlclient-dev is not available, but is referred to by another package.
This may mean that the package is missing, has been obsoleted, or
is only available from another source
sudo apt-get install default-libmysqlclient-dev
I think the most convenient way to solve this problem in 2020 is using another python package. We don't need install any other binary software.
Try this
pip install mysql-connector-python
and then
import mysql.connector
mydb = mysql.connector.connect(
host="",
user="",
passwd="",
database=""
)
cursor = mydb.cursor( buffered=True)
cursor.execute('show tables;')
cursor.execute('insert into test values (null, "a",10)')
mydb.commit()
mydb.disconnect()
If you're on macOS and already installed mysql#5.7 via brew install:
brew install mysql-connector-c
brew unlink mysql#5.7
brew link --overwrite --dry-run mysql#5.7 first, to see what symlinks are getting overwritten
brew link --overwrite --force mysql#5.7 to actually overwrite mysql-related symlinks with mysql#5.7
pip install mysqlclient
I fixed it by installing libmysqlclient:
sudo apt-get install libmysqlclient16-dev
In centos 7 this works for me :
yum install mariadb-devel
pip install mysqlclient
The MySQL-python package is using the mysql_config command to learn about the mysql configuration on your host. Your host does not have the mysql_config command.
The MySQL development libraries package (MySQL-devel-xxx) from dev.mysql.com provides this command and the libraries needed by the MySQL-python package. The MySQL-devel packages are found in the download - community server area. The MySQL development library package names start with MySQL-devel and vary based MySQL version and linux platform (e.g. MySQL-devel-5.5.24-1.linux2.6.x86_64.rpm.)
Note that you do not need to install mysql server.
For Alpine Linux:
$ apk add mariadb-dev mariadb-client mariadb-libs
MariaDB is a drop-in replacement for MySQL and became the new standard as of Alpine 3.2. See https://bugs.alpinelinux.org/issues/4264
On my Fedora 23 machine I had to run the following:
sudo dnf install mysql-devel
In CentOS 7 , the following things should be done:
#step1:install mysql
https://dev.mysql.com/doc/mysql-yum-repo-quick-guide/en/
#step2:
sudo yum install mysql-devel
or
sudo yum install mysql-community-devel
I think, following lines can be executed on terminal
sudo ln -s /usr/local/zend/mysql/bin/mysql_config /usr/sbin/
This mysql_config directory is for zend server on MacOSx. You can do it for linux like following lines
sudo ln -s /usr/local/mysql/bin/mysql_config /usr/sbin/
This is default linux mysql directory.
I had this issues and solved if by adding a symlink to mysql_config.
I had installed mysql with homebrew and saw this in the output.
Error: The `brew link` step did not complete successfully
Depending on how you got mysql it will be in different places. In my case /usr/local/Cellar/mysql
Once you know where it is you should be able to ma a symbolic link to where python is looking for it. /usr/local/mysql
This worked for me.
ln -s /usr/local/Cellar/mysql/<< VERSION >>/bin/mysql_config /usr/local/mysql/bin/mysql_config
I had the same problem. I solved it by following this tutorial to install Python with python3-dev on Ubuntu 16.04:
sudo apt-get update
sudo apt-get -y upgrade
sudo apt-get install -y python3-pip
sudo apt-get install build-essential libssl-dev libffi-dev python3-dev
And now you can set up your virtual environment:
sudo apt-get install -y python3-venv
pyvenv my_env
source my_env/bin/activate
also, i fetch the same problem
I fixed this problem with the following steps:
First I run this command
sudo apt-get install libmysqlclient-dev
then I install
pip install mysqlclient==2.1.0
this is worked for me
You need to install the python-dev package:
sudo apt-get install python-dev
sudo apt-get install python-mysqldb
Python 2.5? Sounds like you are using a very old version of Ubuntu Server (Hardy 8.04?) - please confirm which Linux version the server uses.
python-mysql search on ubuntu package database
Some additional info:
From the README of mysql-python -
Red Hat Linux
.............
MySQL-python is pre-packaged in Red Hat Linux 7.x and newer. This
includes Fedora Core and Red Hat Enterprise Linux. You can also
build your own RPM packages as described above.
Debian GNU/Linux
................
Packaged as python-mysqldb_::
# apt-get install python-mysqldb
Or use Synaptic.
.. _python-mysqldb: http://packages.debian.org/python-mysqldb
Ubuntu
......
Same as with Debian.
Footnote: If you really are using a server distribution older than Ubuntu 10.04 then you are out of official support, and should upgrade sooner rather than later.
This method is only for those who know that Mysql is installed but still mysql_config can't be find. This happens if python install can't find mysql_config in your system path, which mostly happens if you have done the installation via .dmg Mac Package or installed at some custom path. The easiest and documented way by MySqlDB is to change the site.cfg. Find the mysql_config which is probably in /usr/local/mysql/bin/ and change the variable namely mysql_config just like below and run the installation again. Don't forget to un-comment it by removing "#"
Change below line
"#mysql_config = /usr/local/bin/mysql_config"
to
"mysql_config = /usr/local/mysql/bin/mysql_config"
depending upon the path in your system.
By the way I used python install after changing the site.cfg
sudo /System/Library/Frameworks/Python.framework/Versions/2.7/bin/python setup.py install
So far, all solutions (Linux) require sudo or root rights to install .
Here is a solution if you do not have root rights and without sudo. (no sudo apt install ...):
Download the .deb file of the libmysqlclient-dev, e.g. from this mirror
Navigate to the downloaded file and run dpkg -x libmysqlclient-dev_<version tag>.deb . This will extract a folder called usr.
Symlink ./usr/bin/mysql_config to somewhere that is found on your $PATH:
ln -s `pwd` /usr/bin/mysql_config FOLDER_IN_YOUR_PATH
It should now be able to find mysql_config
Tested on Ubuntu 18.04.
For macOS Mojave , additional configuration was required, for compilers to find openssl you may need to set:
export LDFLAGS="-L/usr/local/opt/openssl/lib"
export CPPFLAGS="-I/usr/local/opt/openssl/include"
I encountered the same problem, just added the path where *mysql_config* resided to the environment variable PATH and it worked for me.
sudo apt-get build-dep python-mysqldb will install all the dependencies to build the package from PIP/easy_install
I am trying to install fuse-python package, when I run
python setup.py build
It fails, when I checked the contents of setup.py I found this line
if os.system('pkg-config --exists fuse 2> /dev/null') == 0
this line fails. Also when I check PKG_CONFIG_PATH
echo $PKG_CONFIG_PATH
it prints nothing. Any sort of help is appreciated. Thanks in advance
In Ubuntu the package is libfuse-dev, so to install sudo apt-get install libfuse-dev should do the trick.
Most likely you haven't got the fuse development package installed. You don't say which OS you are using, but on openSuSE
zypper install fuse-devel
should do the trick.
I used sudo apt-get install libfuse-dev and it worked
I had a similar problem. If you have a 64 bit ubuntu like me just install pkg-config via
sudo apt install pkg-config
The problem was, that the 32 bit Version of pkg-config was installed. By installing pkg-config again it installs the 64bit version
I have a question regarding the installation of the boost libraries. Is there a package that I can use the sudo apt-get install to install this package. I searched all of the questions in this forum and using the commands sudo apt-get install libboost1.40-dev I cannot install theh package with this. Also, I can download it from boost.org but I do not know the correct path to install it too. I would prefer to install it using the sudo apt-get install commands if possible. I am using Ubuntu 9.04.
Thanks.
If you want to run with the latest version, you can do the bjam install as mentioned by Ralf, but I suggest you build a 'pseudo' package so you can
uninstall it safely
prevent/notice conflicts with official/existing boost packages.
Here is how to do that:
mkdir -pv /tmp/boostinst
cd /tmp/boostinst/
wget -c 'http://sourceforge.net/projects/boost/files/boost/1.66.0/boost_1_66_0.tar.bz2/download'
tar xf download
cd boost_1_66_0/
./bootstrap.sh --help
./bootstrap.sh --show-libraries
./bootstrap.sh
checkinstall ./b2 install
On new boost version there is other way:
sudo apt-get update
wget -c 'http://sourceforge.net/projects/boost/files/boost/1.50.0/boost_1_50_0.tar.bz2/download'
tar xf download
cd boost_1_50_0
./bootstrap.sh
./b2 install
You can use command aptitude search libboost to see list of the availiable boost libraries. The last version of boost is 1.42 - maybe that's why you can't find version 1.40.
If aptitude search command don't give you sufficient results, try sudo aptitude update and then run aptitude search again.
On my version of Ubuntu (10.04) it's libboost1.40-all-dev
On your version you've probably got an older version of boost, you should just be able to tab-complete to see which version you can install.
In any case what I usually do under Ubuntu is
sudo apt-get install bjam
Extract the downloaded boost archive to your hard-drive and then cd into the root and
sudo bjam install
This way you can get the newest version of boost, and not the slightly outdated one that is available for your Ubuntu version.
This is a link which explain step by step on how to install it (give it some time read!)
http://www.boost.org/doc/libs/1_41_0/more/getting_started/unix-variants.html
but your inline shell command might be the simple and easy way for doing it