Error when connecting mylyn Gitlab connector to Eclipse - gitlab

I'm trying to configure the Mylyn Gitlab Connector for Eclipse Oxygen v4.7.1a but when I try to add a new task it throws me an exception and it does not let me continue with the creation of the new task.
Enter correctly my data and the url address of the gitlab repository and even probe with several url and with all of them throw me the same exception.
Exception Stack Trace:
java.lang.reflect.InvocationTargetException
at org.eclipse.jface.operation.ModalContext.run(ModalContext.java:398)
at org.eclipse.jface.wizard.WizardDialog.run(WizardDialog.java:980)
at org.eclipse.mylyn.tasks.ui.wizards.NewTaskWizard.performFinish(NewTaskWizard.java:113)
at org.eclipse.mylyn.internal.tasks.ui.wizards.SelectRepositoryPage.performFinish(SelectRepositoryPage.java:295)
at org.eclipse.mylyn.internal.tasks.ui.wizards.MultiRepositoryAwareWizard.performFinish(MultiRepositoryAwareWizard.java:53)
at org.eclipse.jface.wizard.WizardDialog.finishPressed(WizardDialog.java:778)
at org.eclipse.jface.wizard.WizardDialog.buttonPressed(WizardDialog.java:417)
at org.eclipse.jface.dialogs.Dialog.lambda$0(Dialog.java:619)
at org.eclipse.swt.events.SelectionListener$1.widgetSelected(SelectionListener.java:81)
at org.eclipse.swt.widgets.TypedListener.handleEvent(TypedListener.java:249)
at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:86)
at org.eclipse.swt.widgets.Display.sendEvent(Display.java:5268)
at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1348)
at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:4522)
at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:4107)
at org.eclipse.jface.window.Window.runEventLoop(Window.java:818)
at org.eclipse.jface.window.Window.open(Window.java:794)
at org.eclipse.mylyn.tasks.ui.TasksUiUtil.openNewTaskEditor(TasksUiUtil.java:237)
at org.eclipse.mylyn.tasks.ui.TasksUiUtil.openNewTaskEditor(TasksUiUtil.java:253)
at org.eclipse.mylyn.internal.tasks.ui.actions.NewTaskAction.run(NewTaskAction.java:95)
at org.eclipse.mylyn.internal.tasks.ui.actions.NewTaskAction.run(NewTaskAction.java:102)
at org.eclipse.ui.internal.PluginAction.runWithEvent(PluginAction.java:247)
at org.eclipse.jface.action.ActionContributionItem.handleWidgetSelection(ActionContributionItem.java:565)
at org.eclipse.jface.action.ActionContributionItem.lambda$4(ActionContributionItem.java:397)
at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:86)
at org.eclipse.swt.widgets.Display.sendEvent(Display.java:5268)
at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1348)
at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:4522)
at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:4107)
at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine$5.run(PartRenderingEngine.java:1150)
at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.run(PartRenderingEngine.java:1039)
at org.eclipse.e4.ui.internal.workbench.E4Workbench.createAndRunUI(E4Workbench.java:153)
at org.eclipse.ui.internal.Workbench.lambda$3(Workbench.java:680)
at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:594)
at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:148)
at org.eclipse.ui.internal.ide.application.IDEApplication.start(IDEApplication.java:151)
at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:653)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:590)
at org.eclipse.equinox.launcher.Main.run(Main.java:1499)
at org.eclipse.equinox.launcher.Main.main(Main.java:1472)
Caused by: java.lang.Error: de.weingardt.mylyn.gitlab.core.exceptions.GitlabException: Invalid path in host
at de.weingardt.mylyn.gitlab.core.GitlabTaskDataHandler.getAttributeMapper(GitlabTaskDataHandler.java:67)
at org.eclipse.mylyn.internal.tasks.ui.util.TasksUiInternal.createTaskData(TasksUiInternal.java:872)
at org.eclipse.mylyn.tasks.ui.wizards.NewTaskWizard$1.run(NewTaskWizard.java:103)
at org.eclipse.jface.operation.ModalContext$ModalContextThread.run(ModalContext.java:119)
Caused by: de.weingardt.mylyn.gitlab.core.exceptions.GitlabException: Invalid path in host
at de.weingardt.mylyn.gitlab.core.exceptions.GitlabExceptionHandler.handle(GitlabExceptionHandler.java:20)
at de.weingardt.mylyn.gitlab.core.ConnectionManager.validate(ConnectionManager.java:139)
at de.weingardt.mylyn.gitlab.core.ConnectionManager.get(ConnectionManager.java:159)
at de.weingardt.mylyn.gitlab.core.ConnectionManager.get(ConnectionManager.java:45)
at de.weingardt.mylyn.gitlab.core.GitlabTaskDataHandler.getAttributeMapper(GitlabTaskDataHandler.java:65)
... 3 more
Any suggestions on how to solve this problem?

Right click on Mylyn repository and select Repository -> Properties
Expand Additional Settings and check "Use private token"
works well for me.
Eclipse Oxygen.2 Release (4.7.2)

Related

Redhawk V3 - IDE Not displaying domain correctly

On a fresh install of Redhawk version 3 everything appears to be working and interacting with the domain works fine through Python. I appreciate the IDE has been deprecated but I am wondering if there is a fix to an issue when inspecting the domain. When connecting to a domain the IDE is producing the following error
Failed to fetch profile object from profile path: 'sca:///domain/DomainManager.dmd.xml?domain=REDHAWK_DEV&fs=IOR%3A000000000000001749444C3A43462F46696C654D616E616765723A312E300000000000010000000000000070010102000B00000031302E31312E322E3132000022CC00001C000000FF446F6D61696E4D616E61676572FEDD11376201003E5C00000000000200000000000000080000000100000000545441010000001C00000001000000010001000100000001000105090101000100000009010100#/'
The full stack indicates it is trying to access a file that doesn't exist (DomainManager.dmd.xml, which doesn't exist), full stack
org.eclipse.emf.ecore.resource.impl.ResourceSetImpl$1DiagnosticWrappedException: org.eclipse.core.runtime.CoreException: File cache error: /home/centos/workspace/.metadata/.plugins/gov.redhawk.sca.efs/fileCache/sdr_REDHAWK_DEV/dom/domain/DomainManager.dmd.xml at org.eclipse.emf.ecore.resource.impl.ResourceSetImpl.handleDemandLoadException(ResourceSetImpl.java:319) at org.eclipse.emf.ecore.resource.impl.ResourceSetImpl.demandLoadHelper(ResourceSetImpl.java:278) at org.eclipse.emf.ecore.resource.impl.ResourceSetImpl.getResource(ResourceSetImpl.java:406) at org.eclipse.emf.ecore.resource.impl.ResourceSetImpl.getEObject(ResourceSetImpl.java:220) at gov.redhawk.model.sca.ProfileObjectWrapper$Util.fetchProfileObject(ProfileObjectWrapper.java:225) at gov.redhawk.model.sca.impl.ScaPropertyContainerImpl.fetchProfileObject(ScaPropertyContainerImpl.java:379) at gov.redhawk.model.sca.impl.ScaPropertyContainerImpl.fetchPropertyDefinitions(ScaPropertyContainerImpl.java:708) at gov.redhawk.model.sca.impl.ScaPropertyContainerImpl.fetchProperties(ScaPropertyContainerImpl.java:611) at gov.redhawk.model.sca.impl.ScaDomainManagerImpl.fetchAttributes(ScaDomainManagerImpl.java:2187) at gov.redhawk.model.sca.impl.CorbaObjWrapperImpl.refresh(CorbaObjWrapperImpl.java:761) at gov.redhawk.sca.model.provider.refresh.internal.RefresherSwitch$1.refresh(RefresherSwitch.java:90) at gov.redhawk.sca.model.provider.refresh.internal.RefresherSwitch$1.refresh(RefresherSwitch.java:84) at gov.redhawk.sca.model.provider.refresh.internal.RefreshTasker.refresh(RefreshTasker.java:264) at gov.redhawk.sca.model.provider.refresh.internal.RefreshTasker$RefreshTask.run(RefreshTasker.java:214) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$201(ScheduledThreadPoolExecutor.java:180) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:293) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:750) Caused by: org.eclipse.core.runtime.CoreException: File cache error: /home/centos/workspace/.metadata/.plugins/gov.redhawk.sca.efs/fileCache/sdr_REDHAWK_DEV/dom/domain/DomainManager.dmd.xml at gov.redhawk.efs.sca.internal.cache.FileCache.downloadFile(FileCache.java:159) at gov.redhawk.efs.sca.internal.cache.FileCache.update(FileCache.java:74) at gov.redhawk.efs.sca.internal.cache.FileCache.openInputStream(FileCache.java:84) at gov.redhawk.efs.sca.internal.ScaFileStore.openInputStream(ScaFileStore.java:306) at sun.reflect.GeneratedMethodAccessor25.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.eclipse.emf.ecore.resource.impl.EFSURIHandlerImpl.createInputStream(EFSURIHandlerImpl.java:249) at org.eclipse.emf.ecore.resource.impl.ExtensibleURIConverterImpl.createInputStream(ExtensibleURIConverterImpl.java:360) at org.eclipse.emf.ecore.resource.impl.ResourceImpl.load(ResourceImpl.java:1314) at org.eclipse.emf.ecore.resource.impl.ResourceSetImpl.demandLoad(ResourceSetImpl.java:259) at org.eclipse.emf.ecore.resource.impl.ResourceSetImpl.demandLoadHelper(ResourceSetImpl.java:274) ... 19 more Caused by: java.util.concurrent.ExecutionException: org.omg.CORBA.MARSHAL: Server-side Exception: null vmcid: 0x41540000 minor code: 10 completed: No at mil.jpeojtrs.sca.util.ProtectedThreadExecutor.submit(ProtectedThreadExecutor.java:86) at gov.redhawk.efs.sca.internal.cache.FileCache.readProtected(FileCache.java:199) at gov.redhawk.efs.sca.internal.cache.FileCache.copyLarge(FileCache.java:187) at gov.redhawk.efs.sca.internal.cache.FileCache.downloadFile(FileCache.java:137) ... 30 more Caused by: org.omg.CORBA.MARSHAL: Server-side Exception: null vmcid: 0x41540000 minor code: 10 completed: No at sun.reflect.GeneratedConstructorAccessor26.newInstance(Unknown Source) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) at java.lang.reflect.Constructor.newInstance(Constructor.java:423) at org.jacorb.orb.SystemExceptionHelper.read(SystemExceptionHelper.java:222) at org.jacorb.orb.ReplyReceiver.getReply(ReplyReceiver.java:456) at org.jacorb.orb.Delegate._invoke_internal(Delegate.java:1419) at org.jacorb.orb.Delegate.invoke_internal(Delegate.java:1188) at org.jacorb.orb.Delegate.invoke(Delegate.java:1176) at org.omg.CORBA.portable.ObjectImpl._invoke(ObjectImpl.java:475) at CF._FileStub.read(_FileStub.java:66) at gov.redhawk.efs.sca.internal.ScaFileInputStream.read(ScaFileInputStream.java:84) at java.io.InputStream.read(InputStream.java:101) at gov.redhawk.efs.sca.internal.cache.FileCache$1.call(FileCache.java:203) at gov.redhawk.efs.sca.internal.cache.FileCache$1.call(FileCache.java:1) at mil.jpeojtrs.sca.util.ProtectedThreadExecutor.submit(ProtectedThreadExecutor.java:84) ... 33 more
Confirmed files exist on Redhawk V2 system, removed and re-added workspace directory
It seems that the issue was fixed in v3.0.1 - https://github.com/RedhawkSDR/redhawk/releases/tag/3.0.1.
The effort in REDHAWK 3.0.1 focused on:
Replace log4j with reload4j in the Core Framework and in the IDE.
Resolved bug preventing fei3-generator from generating python code
Resolved bug preventing IDE from connecting to a running redhawk-3.0.0 domain

Apache Zeppelin: How to manage dependencies for groovy interpreter

I've use Apache Zeppelin 0.8.1.
I want user Groovy interpreter. And use #Grape dep menagement:
%groovy
#Grapes([
#Grab('com.github.twosigma.beakerx:beaker-kernel-groovy:0.9.0')
])
import com.twosigma.beakerx.widget.IntSlider
But got error:
java.lang.RuntimeException: Failed to parse groovy script: java.lang.NoClassDefFoundError: org/apache/ivy/Ivy
at org.apache.zeppelin.groovy.GroovyInterpreter.getGroovyScript(GroovyInterpreter.java:140)
Reasonable. By official documentation of Dependency Management for Interpreter I've provide artifact dep: org.apache.ivy:ivy:2.5.0-rc1:
In repositories I have enabled Central (http://repo1.maven.org/maven2/) which have that artifact:
But on interpreter restarting and notebook reload I just got error: Error setting properties for interpreter 'groovy.groovy': Cannot fetch dependencies for org.apache.ivy:ivy:2.5.0-rc1:
I have tried (as experiment, not long-term solution) enter into zeppelin docker container and download http://repo1.maven.org/maven2/org/apache/ivy/ivy/2.5.0-rc1/ivy-2.5.0-rc1.jar into /zeppelin/interpreter/groovy, restart interpreter, reload nootebook and it looks like groovy try resolve deps - i see progress-bar for second, but then again got error:
java.lang.RuntimeException: Failed to parse groovy script: org.codehaus.groovy.control.MultipleCompilationErrorsException: startup failed: General error during conversion: Error grabbing Grapes -- [unresolved dependency: com.github.twosigma.beakerx#beaker-kernel-groovy;0.9.0: not found] java.lang.RuntimeException: Error grabbing Grapes -- [unresolved dependency: com.github.twosigma.beakerx#beaker-kernel-groovy;0.9.0: not found] at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) at java.lang.reflect.Constructor.newInstance(Constructor.java:423) at org.codehaus.groovy.reflection.CachedConstructor.invoke(CachedConstructor.java:83) at org.codehaus.groovy.reflection.CachedConstructor.doConstructorInvoke(CachedConstructor.java:77) at org.codehaus.groovy.runtime.callsite.ConstructorSite$ConstructorSiteNoUnwrap.callConstructor(ConstructorSite.java:84) at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCallConstructor(CallSiteArray.java:60) at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callConstructor(AbstractCallSite.java:235) at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callConstructor(AbstractCallSite.java:247) at groovy.grape.GrapeIvy.getDependencies(GrapeIvy.groovy:426) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.codehaus.groovy.runtime.callsite.PogoMetaMethodSite$PogoCachedMethodSite.invoke(PogoMetaMethodSite.java:169) at org.codehaus.groovy.runtime.callsite.PogoMetaMethodSite.callCurrent(PogoMetaMethodSite.java:59) at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCallCurrent(CallSiteArray.java:52) at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callCurrent(AbstractCallSite.java:154) at groovy.grape.GrapeIvy.resolve(GrapeIvy.groovy:573) at groovy.grape.GrapeIvy$resolve$1.callCurrent(Unknown Source) at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCallCurrent(CallSiteArray.java:52) at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callCurrent(AbstractCallSite.java:154) at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callCurrent(AbstractCallSite.java:190) at groovy.grape.GrapeIvy.resolve(GrapeIvy.groovy:540) at groovy.grape.GrapeIvy$resolve$0.callCurrent(Unknown Source) at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCallCurrent(CallSiteArray.java:52) at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callCurrent(AbstractCallSite.java:154) at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callCurrent(AbstractCallSite.java:182) at groovy.grape.GrapeIvy.grab(GrapeIvy.groovy:258) at groovy.grape.Grape.grab(Grape.java:167) at groovy.grape.GrabAnnotationTransformation.visit(GrabAnnotationTransformation.java:378) at org.codehaus.groovy.transform.ASTTransformationVisitor$3.call(ASTTransformationVisitor.java:321) at org.codehaus.groovy.control.CompilationUnit.applyToSourceUnits(CompilationUnit.java:931) at org.codehaus.groovy.control.CompilationUnit.doPhaseOperation(CompilationUnit.java:593) at org.codehaus.groovy.control.CompilationUnit.processPhaseOperations(CompilationUnit.java:569) at org.codehaus.groovy.control.CompilationUnit.compile(CompilationUnit.java:546) at groovy.lang.GroovyClassLoader.doParseClass(GroovyClassLoader.java:298) at groovy.lang.GroovyClassLoader.parseClass(GroovyClassLoader.java:268) at groovy.lang.GroovyShell.parseClass(GroovyShell.java:688) at groovy.lang.GroovyShell.parse(GroovyShell.java:700) at groovy.lang.GroovyShell.parse(GroovyShell.java:736) at org.apache.zeppelin.groovy.GroovyInterpreter.getGroovyScript(GroovyInterpreter.java:133) at org.apache.zeppelin.groovy.GroovyInterpreter.interpret(GroovyInterpreter.java:155) at org.apache.zeppelin.interpreter.LazyOpenInterpreter.interpret(LazyOpenInterpreter.java:103) at org.apache.zeppelin.interpreter.remote.RemoteInterpreterServer$InterpretJob.jobRun(RemoteInterpreterServer.java:632) at org.apache.zeppelin.scheduler.Job.run(Job.java:188) at org.apache.zeppelin.scheduler.ParallelScheduler$JobRunner.run(ParallelScheduler.java:162) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$201(ScheduledThreadPoolExecutor.java:180) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:293) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748) 1 error at org.apache.zeppelin.groovy.GroovyInterpreter.getGroovyScript(GroovyInterpreter.java:140)
It looks like groovy does not see repository configurations and try resolve dependencies only locally.
What I should setup to change that?
groovy in zeppelin not designed to support #Grab
your artifact is present in a specific repository
http://maven.imagej.net/content/repositories/public/
check this artifact search engine:
https://mvnrepository.com/artifact/com.github.twosigma.beakerx/beaker-kernel-groovy/0.9.0
so, just add a new repo to zeppelin
UPD:
for org.apache.ivy:ivy:2.5.0-rc1 there are a lot of dependencies downloaded
and one of them fails. Here is what I see in console:
Error while downloading repos for interpreter group : groovy,
go to interpreter setting page click on edit and save it again
to make this interpreter work properly:
Cannot fetch dependencies for org.apache.ivy:ivy:2.5.0-rc1
...
Caused by: org.sonatype.aether.resolution.DependencyResolutionException:
Could not find artifact com.jcraft:jsch.agentproxy:jar:0.0.9 in central
(http://repo1.maven.org/maven2/)
...
(IHMO it's a bug of zeppelin)
but to make it work set
artifact= org.apache.ivy:ivy:2.4.0
exclude= com.jcraft:jsch.agentproxy

Running maven in virtual box seems be causing issues with its libraries

I am running maven 3.3.9 in virtual box with JDK8
and when I run the 'mvn' command from the terminal I get the following error:
constituent[25]: file:/usr/share/maven/lib/guice.jar
constituent[26]: file:/usr/share/maven/lib/eclipse-aether-impl.jar
constituent[27]: file:/usr/share/maven/lib/guava.jar
constituent[28]: file:/usr/share/maven/lib/commons-lang3.jar
constituent[29]: file:/usr/share/maven/lib/wagon-http-shaded.jar
constituent[30]: file:/usr/share/maven/lib/javax.inject.jar
constituent[31]: file:/usr/share/maven/lib/maven-compat-3.x.jar
constituent[32]: file:/usr/share/maven/lib/commons-io.jar
constituent[33]: file:/usr/share/maven/lib/plexus-interpolation.jar
constituent[34]: file:/usr/share/maven/lib/commons-lang.jar
constituent[35]: file:/usr/share/maven/lib/plexus-utils.jar
constituent[36]: file:/usr/share/maven/lib/plexus-cipher.jar
constituent[37]: file:/usr/share/maven/lib/wagon-provider-api.jar
constituent[38]: file:/usr/share/maven/lib/wagon-http-shared.jar
constituent[39]: file:/usr/share/maven/lib/eclipse-aether-transport-wagon.jar
constituent[40]: file:/usr/share/maven/lib/sisu-plexus.jar
constituent[41]: file:/usr/share/maven/conf/logging/
---------------------------------------------------
Exception in thread "main" java.lang.NoClassDefFoundError: javax/inject/Provider
at org.apache.maven.cli.MavenCli.container(MavenCli.java:545)
at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:281)
at org.apache.maven.cli.MavenCli.main(MavenCli.java:199)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:289)
at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:229)
at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:415)
at org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:356)
Caused by: java.lang.ClassNotFoundException: javax.inject.Provider
at org.codehaus.plexus.classworlds.strategy.SelfFirstStrategy.loadClass(SelfFirstStrategy.java:50)
at org.codehaus.plexus.classworlds.realm.ClassRealm.unsynchronizedLoadClass(ClassRealm.java:271)
at org.codehaus.plexus.classworlds.realm.ClassRealm.loadClass(ClassRealm.java:247)
at org.codehaus.plexus.classworlds.realm.ClassRealm.loadClass(ClassRealm.java:239)
... 11 more
I read a few forums and they all suggest upgrading the JDK but I am already on the latest version. :-(
can someone please guide me with this issue.
The same version on windows machine works fine with same JDK

jhipster RDS connection issue

I'm trying to deploy to AWS an application developed with JHipster, but I get an error when trying to do so. It looks like I'm unable to connect to the database.
I created a simple JSP page that connects directly to the database via jdbc and it works fine, so it seems I'm doing something wrong when configuring the application.
This is my current application.yml:
spring:
profiles:
active: prod
datasource:
dataSourceClassName: com.mysql.jdbc.jdbc2.optional.MysqlDataSource
url: jdbc:mysql://rds_url:3306/db?user=user&password=password
databaseName: db
serverName: rds_url
username: user
password: password
cachePrepStmts: true
prepStmtCacheSize: 250
prepStmtCacheSqlLimit: 2048
useServerPrepStmts: true
And this is what I see in the logs:
Caused by: com.zaxxer.hikari.pool.PoolInitializationException: Exception during pool initialization
at com.zaxxer.hikari.pool.BaseHikariPool.initializeConnections(BaseHikariPool.java:542)
at com.zaxxer.hikari.pool.BaseHikariPool.<init>(BaseHikariPool.java:171)
at com.zaxxer.hikari.pool.HikariPool.<init>(HikariPool.java:60)
at com.zaxxer.hikari.pool.HikariPool.<init>(HikariPool.java:48)
at com.zaxxer.hikari.HikariDataSource.<init>(HikariDataSource.java:80)
at com.test.config.DatabaseConfiguration.dataSource(DatabaseConfiguration.java:83)
at com.test.config.DatabaseConfiguration$$EnhancerBySpringCGLIB$$b2394f0e.CGLIB$dataSource$1(<generated>)
at com.test.config.DatabaseConfiguration$$EnhancerBySpringCGLIB$$b2394f0e$$FastClassBySpringCGLIB$$e28d8821.invoke(<generated>)
at org.springframework.cglib.proxy.MethodProxy.invokeSuper(MethodProxy.java:228)
at org.springframework.context.annotation.ConfigurationClassEnhancer$BeanMethodInterceptor.intercept(ConfigurationClassEnhancer.java:309)
at com.test.config.DatabaseConfiguration$$EnhancerBySpringCGLIB$$b2394f0e.dataSource(<generated>)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:162)
... 137 more
Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure
The last packet sent successfully to the server was 0 milliseconds ago. The driver has not received any packets from the server.
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:422)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:389)
at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1038)
at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:338)
at com.mysql.jdbc.ConnectionImpl.coreConnect(ConnectionImpl.java:2237)
at com.mysql.jdbc.ConnectionImpl.connectOneTryOnly(ConnectionImpl.java:2270)
at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2069)
at com.mysql.jdbc.ConnectionImpl.<init>(ConnectionImpl.java:794)
at com.mysql.jdbc.JDBC4Connection.<init>(JDBC4Connection.java:44)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:422)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:389)
at com.mysql.jdbc.ConnectionImpl.getInstance(ConnectionImpl.java:399)
at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:325)
at com.mysql.jdbc.jdbc2.optional.MysqlDataSource.getConnection(MysqlDataSource.java:422)
at com.mysql.jdbc.jdbc2.optional.MysqlDataSource.getConnection(MysqlDataSource.java:134)
at com.mysql.jdbc.jdbc2.optional.MysqlDataSource.getConnection(MysqlDataSource.java:105)
at com.zaxxer.hikari.pool.BaseHikariPool.addConnection(BaseHikariPool.java:438)
at com.zaxxer.hikari.pool.BaseHikariPool.initializeConnections(BaseHikariPool.java:540)
... 152 more
Caused by: java.net.ConnectException: Connection refused
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:345)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at com.mysql.jdbc.StandardSocketFactory.connect(StandardSocketFactory.java:213)
at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:297)
... 169 more
Here's a link to more detailed logs.
Any help will be deeply appreciated.
Thanks,
Jodevan.
Alright. I made it work.
In order to test if there was some problem in the yml configuration file, I decided hard-coding the database properties directly in the DatabaseConfiguration.java file and it simply worked!
When the home page was rendered, my surprise: development mode!
I have no idea how this happened, since the package was supposed to be generated with the production profile activated. This is how the package was being generated as described here:
mvn -Pprod package
But I forgot that I also need to set this environment property in Tomcat.
By the way, since this is an Tomcat environment property, it's needed to restart your EBS environment.
Last but not least, make sure your RDS has a security group that allows connection from the EC2 where your EBS is configured.

Problems installing appdynamics

I have installed Appdynamics lite on my server and it worked fine when I used to run my tomcat instance with root user. But from the time I have created a new user "Tomcat" and start executing my apache tomcat with this user, I am not able to run appdynamics. I have copied the javaagent at this location with all rights(read,write,execute) to tomcat "/home/tomcat/profiler/AppServerLite". It throws an exception as follows :
Install Directory resolved to[/home/tomcat/profiler/AppServerLite]
java.lang.RuntimeException: Invalid Agent Installation Directory [/home/tomcat/profiler/AppServerLite]
at com.singularity.ee.agent.appagent.AgentEntryPoint.addThirdPartyURLs(AgentEntryPoint.java:190)
at com.singularity.ee.agent.appagent.AgentEntryPoint.premain(AgentEntryPoint.java:144)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:616)
at sun.instrument.InstrumentationImpl.loadClassAndStartAgent(InstrumentationImpl.java:343)
at sun.instrument.InstrumentationImpl.loadClassAndCallPremain(InstrumentationImpl.java:358)
Install Directory resolved to[/home/tomcat/profiler/AppServerLite]
java.lang.RuntimeException: Invalid Agent Installation Directory [/home/tomcat/profiler/AppServerLite]
at com.singularity.ee.agent.appagent.AgentEntryPoint.addThirdPartyURLs(AgentEntryPoint.java:190)
at com.singularity.ee.agent.appagent.AgentEntryPoint.premain(AgentEntryPoint.java:144)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:616)
at sun.instrument.InstrumentationImpl.loadClassAndStartAgent(InstrumentationImpl.java:343)
at sun.instrument.InstrumentationImpl.loadClassAndCallPremain(InstrumentationImpl.java:358)
18 Apr, 2013 1:57:03 PM org.apache.catalina.core.AprLifecycleListener init
You should copy all files to run the agent, not just javaagent.jar.
This is a thread about it. http://appsphere.appdynamics.com/t5/Lite-for-Java/Keep-getting-a-quot-Invalid-Agent-Installation-Directory-quot-on/td-p/1151
A great place to ask this question would be on the AppDynamics discussion forums so that AppDynamics support can answer you directly... http://appsphere.appdynamics.com/t5/Discussions/ct-p/Discussions
I'm guessing there is a permissions issue somewhere.

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