I was using spark 1.3 to read a JSON stream using .jsonRDD. However, when I was using this with 2.1 it did not work as it is deprecated. The updated version is read.json(). However read.json does not seem to work and gives me an error
u"cannot resolve '`availableDocks`' given input columns: [];
The code is given below
ssc = StreamingContext(sc, 60)
streams=ssc.textFileStream('s3://realtime-nyc-bike')
def getSparkSessionInstance(sparkConf):
if ("sparkSessionSingletonInstance" not in globals()):
globals()["sparkSessionSingletonInstance"] = SparkSession \
.builder \
.config(conf=sparkConf) \
.getOrCreate()
return globals()["sparkSessionSingletonInstance"]
def process(time, rdd):
print("========= %s =========" % str(time))
try:
# Get the singleton instance of SparkSession
spark = getSparkSessionInstance(rdd.context.getConf())
# Convert RDD[String] to RDD[Row] to DataFrame
df = spark.read.json(rdd)
# Creates a temporary view using the DataFrame
df.createOrReplaceTempView("station_data")
results=spark.sql("select stationName from station_data where availableDocks > 20")
results.show()
The json is a valid format and verified. Is there a way to specify columns for a json. This was working fine on 1.3 using jsonRDD. The json data can be obtained from https://feeds.citibikenyc.com/stations/stations.json where i am using only the stationBeanList.
Related
I'm trying to retrieve tweets from my Kafka cluster to Spark Streaming in which I perform some analysis to store them in an ElasticSearch Index.
Versions :
Spark - 2.3.0
Pyspark - 2.3.0
Kafka - 2.3.0
Elastic Search - 7.9
Elastic Search Hadoop - 7.6.2
I run the following code in my Jupyter env to write the streaming dataframe into Elastic Search .
import os
os.environ['PYSPARK_SUBMIT_ARGS'] = '--packages org.apache.spark:spark-streaming-kafka-0-8_2.11:2.3.0,org.elasticsearch:elasticsearch-hadoop:7.6.2 pyspark-shell'
from pyspark import SparkContext
# Spark Streaming
from pyspark.streaming import StreamingContext
# Kafka
from pyspark.streaming.kafka import KafkaUtils
# json parsing
import json
import nltk
import logging
from datetime import datetime
from pyspark.sql import *
from pyspark.sql.types import *
from pyspark.sql.functions import *
from nltk.sentiment.vader import SentimentIntensityAnalyzer
def getSqlContextInstance(sparkContext):
if ('sqlContextSingletonInstance' not in globals()):
globals()['sqlContextSingletonInstance'] = SQLContext(sparkContext)
return globals()['sqlContextSingletonInstance']
def analyze_sentiment(tweet):
scores = dict([('pos', 0), ('neu', 0), ('neg', 0), ('compound', 0)])
sentiment_analyzer = SentimentIntensityAnalyzer()
score = sentiment_analyzer.polarity_scores(tweet)
for k in sorted(score):
scores[k] += score[k]
return json.dumps(scores)
def process(time,rdd):
print("========= %s =========" % str(time))
try:
if rdd.count()==0:
raise Exception('Empty')
sqlContext = getSqlContextInstance(rdd.context)
df = sqlContext.read.json(rdd)
df = df.filter("text not like 'RT #%'")
if df.count() == 0:
raise Exception('Empty')
udf_func = udf(lambda x: analyze_sentiment(x),returnType=StringType())
df = df.withColumn("Sentiment",lit(udf_func(df.text)))
print(df.take(10))
df.writeStream.outputMode('append').format('org.elasticsearch.spark.sql').option('es.nodes','localhost').option('es.port',9200)\
.option('checkpointLocation','/checkpoint').option('es.spark.sql.streaming.sink.log.enabled',False).start('PythonSparkStreamingKafka_RM_01').awaitTermination()
except Exception as e:
print(e)
pass
sc = SparkContext(appName="PythonSparkStreamingKafka_RM_01")
sc.setLogLevel("INFO")
ssc = StreamingContext(sc, 20)
kafkaStream = KafkaUtils.createDirectStream(ssc, ['kafkaspark'], {
'bootstrap.servers':'localhost:9092',
'group.id':'spark-streaming',
'fetch.message.max.bytes':'15728640',
'auto.offset.reset':'largest'})
parsed = kafkaStream.map(lambda v: json.loads(v[1]))
parsed.foreachRDD(process)
ssc.start()
ssc.awaitTermination(timeout=180)
But I get the error :
'writeStream' can be called only on streaming Dataset/DataFrame;
And , it looks like I have to use .readStream , but how do I use it to read from KafkaStream without CreateDirectStream ?
Could someone please help me with writing this dataframe into Elastic Search . I am a beginner to Spark Streaming and Elastic Search and find it quite challenging . Would be happy if someone could guide me through getting this done.
.writeStream is a part of the Spark Structured Streaming API, so you need to use corresponding API to start reading the data - the spark.readStream, and pass options specific for the Kafka source that are described in the separate document, and also use the additional jar that contains the Kafka implementation. The corresponding code would look like that (full code is here):
val streamingInputDF = spark.readStream
.format("kafka")
.option("kafka.bootstrap.servers", "192.168.0.10:9092")
.option("subscribe", "tweets-txt")
.load()
i am building a datapipeline which consume data from RESTApi in json format and pushed to Spark Dataframe. Spark Version: 2.4.4
but getting error as
df = SQLContext.jsonRDD(rdd)
AttributeError: type object 'SQLContext' has no attribute 'jsonRDD'
Code:
from pyspark import SparkConf,SparkContext
from pyspark.sql import SparkSession
from urllib import urlopen
from pyspark import SQLContext
import json
spark = SparkSession \
.builder \
.appName("DataCleansing") \
.getOrCreate()
def convert_single_object_per_line(json_list):
json_string = ""
for line in json_list:
json_string += json.dumps(line) + "\n"
return json_string
def parse_dataframe(json_data):
r = convert_single_object_per_line(json_data)
mylist = []
for line in r.splitlines():
mylist.append(line)
rdd = spark.sparkContext.parallelize(mylist)
df = SQLContext.jsonRDD(rdd)
return df
url = "https://mylink"
response = urlopen(url)
data = str(response.read())
json_data = json.loads(data)
df = parse_dataframe(json_data)
if there is any other better way to query RestApi and bring data to Spark Dataframe using Pyspark.
I am not sure if i am missing something.
Check Spark Rest API Data source. One advantage with this library is it will use multiple executors to fetch data rest api & create data frame for you.
In your code, you are fetching all data into the driver & creating DataFrame, It might fail with heap space if you have very huge data.
url = "https://mylink"
options = { 'url' : url, 'method' : 'GET', 'readTimeout' : '10000', 'connectionTimeout' : '2000', 'partitions' : '10'}
# Now we create the Dataframe which contains the result from the call to the API
df = spark.read.format("org.apache.dsext.spark.datasource.rest.RestDataSource").options(**options).load()
I am trying to read data from BigQuery using pandas and pyspark. I am able to get the data but somehow getting below error while converting it into Spark DataFrame.
py4j.protocol.Py4JJavaError: An error occurred while calling o28.showString.
: java.lang.IllegalStateException: Could not find TLS ALPN provider; no working netty-tcnative, Conscrypt, or Jetty NPN/ALPN available
at com.google.cloud.spark.bigquery.repackaged.io.grpc.netty.shaded.io.grpc.netty.GrpcSslContexts.defaultSslProvider(GrpcSslContexts.java:258)
at com.google.cloud.spark.bigquery.repackaged.io.grpc.netty.shaded.io.grpc.netty.GrpcSslContexts.configure(GrpcSslContexts.java:171)
at com.google.cloud.spark.bigquery.repackaged.io.grpc.netty.shaded.io.grpc.netty.GrpcSslContexts.forClient(GrpcSslContexts.java:120)
at com.google.cloud.spark.bigquery.repackaged.io.grpc.netty.shaded.io.grpc.netty.NettyChannelBuilder.buildTransportFactory(NettyChannelBuilder.java:401)
at com.google.cloud.spark.bigquery.repackaged.io.grpc.internal.AbstractManagedChannelImplBuilder.build(AbstractManagedChannelImplBuilder.java:444)
at com.google.cloud.spark.bigquery.repackaged.com.google.api.gax.grpc.InstantiatingGrpcChannelProvider.createSingleChannel(InstantiatingGrpcChannelProvider.java:223)
at com.google.cloud.spark.bigquery.repackaged.com.google.api.gax.grpc.InstantiatingGrpcChannelProvider.createChannel(InstantiatingGrpcChannelProvider.java:169)
at com.google.cloud.spark.bigquery.repackaged.com.google.api.gax.grpc.InstantiatingGrpcChannelProvider.getTransportChannel(InstantiatingGrpcChannelProvider.java:156)
at com.google.cloud.spark.bigquery.repackaged.com.google.api.gax.rpc.ClientContext.create(ClientContext.java:157)
Following is the environment detail
Python version : 3.7
Spark version : 2.4.3
Java version : 1.8
The code is as follow
import google.auth
import pyspark
from pyspark import SparkConf, SparkContext
from pyspark.sql import SparkSession , SQLContext
from google.cloud import bigquery
# Currently this only supports queries which have at least 10 MB of results
QUERY = """ SELECT * FROM test limit 1 """
#spark = SparkSession.builder.appName('Query Results').getOrCreate()
sc = pyspark.SparkContext()
bq = bigquery.Client()
print('Querying BigQuery')
project_id = ''
query_job = bq.query(QUERY,project=project_id)
# Wait for query execution
query_job.result()
df = SQLContext(sc).read.format('bigquery') \
.option('dataset', query_job.destination.dataset_id) \
.option('table', query_job.destination.table_id)\
.option("type", "direct")\
.load()
df.show()
I am looking some help to solve this issue.
I managed to find the better solution referencing this link , below is my working code :
Install pandas_gbq package in python library before writing below code .
import pandas_gbq
from pyspark.context import SparkContext
from pyspark.sql.session import SparkSession
project_id = "<your-project-id>"
query = """ SELECT * from testSchema.testTable"""
athletes = pandas_gbq.read_gbq(query=query, project_id=project_id,dialect = 'standard')
# Get a reference to the Spark Session
sc = SparkContext()
spark = SparkSession(sc)
# convert from Pandas to Spark
sparkDF = spark.createDataFrame(athletes)
# perform an operation on the DataFrame
print(sparkDF.count())
sparkDF.show()
Hope it helps to someone ! Keep pysparking :)
On running the example given in the programming guide[link] for python spark structured streaming
http://spark.apache.org/docs/latest/structured-streaming-programming-guide.html
I get below Error :
TypeError: 'Builder' object is not callable
from pyspark.sql import SparkSession
from pyspark.sql.functions import explode
from pyspark.sql.functions import split
spark = SparkSession.builder()\
.appName("StructuredNetworkWordCount")\
.getOrCreate()
# Create DataFrame representing the stream of input lines from connection to localhost:9999
lines = spark\
.readStream\
.format('socket')\
.option('host', 'localhost')\
.option('port', 9999)\
.load()
# Split the lines into words
words = lines.select(
explode(
split(lines.value, ' ')
).alias('word')
)
# Generate running word count
wordCounts = words.groupBy('word').count()
# Start running the query that prints the running counts to the console
query = wordCounts\
.writeStream\
.outputMode('complete')\
.format('console')\
.start()
query.awaitTermination()
Error :
omkar#rudra:~/thesis/backUp$ spark-submit structured.py
Traceback (most recent call last):
File "/home/omkar/thesis/backUp/structured.py", line 8, in <module>
spark = SparkSession.builder()\
TypeError: 'Builder' object is not callable
For
spark = SparkSession.builder()\
.appName("StructuredNetworkWordCount")\
.getOrCreate()
modify .builder() to .builder as :
spark = SparkSession.builder\
.appName("StructuredNetworkWordCount")\
.getOrCreate()
Source : https://issues.apache.org/jira/browse/SPARK-18426
When running python example in Structured Streaming Guide, get the error:
spark = SparkSession.builder().master("local[1]").appName("Example").getOrCreate()
TypeError: 'Builder' object is not callable
This is fixed by changing .builder() to .builder
spark = SparkSession.builder.master("local[1]").appName("Demo").getOrCreate()
After removing this-() in builder while creating sparksession,the code will run.
I am trying to read data from HDFS on AWS EC2 cluster using Jupiter Notebook. It has 7 nodes. I am using HDP 2.4 and my code is below. The table has millions of rows but the code does not return any rows."ec2-xx-xxx-xxx-xx.compute-1.amazonaws.com" is the server (ambari-server).
from pyspark.sql import SQLContext
sqlContext = HiveContext(sc)
demography = sqlContext.read.load("hdfs://ec2-xx-xx-xxx-xx.compute-1.amazonaws.com:8020/tmp/FAERS/demography_2012q4_2016q1_duplicates_removed.csv", format="com.databricks.spark.csv", header="true", inferSchema="true")
demography.printSchema()
demography.cache()
print demography.count()
But using sc.textFile, I get the correct number of rows
data = sc.textFile("hdfs://ec2-xx-xxx-xxx-xx.compute-1.amazonaws.com:8020/tmp/FAERS/demography_2012q4_2016q1_duplicates_removed.csv")
schema= data.map(lambda x: x.split(",")).first() #get schema
header = data.first() # extract header
data=data.filter(lambda x:x !=header) # filter out header
data= data.map(lambda x: x.split(","))
data.count()
3641865
The answer by Indrajit given here solved my problem. The problem was with the spark-csv jar.