Could not create Vfs.Dir from url - jhipster

I created a microservice with data source mongodb and tried run it on my local. My mongodb is running on docker. I can access mongodb from my local. I got below error. Any suggestion?
2016-09-04 20:56:50.029 WARN 46100 --- [ main] org.reflections.Reflections : could not create Vfs.Dir from url. ignoring the exception and continuing
org.reflections.ReflectionsException: could not create Vfs.Dir from url, no matching UrlType was found [file:/System/Library/Java/Extensions/libJ3DAudio.jnilib]
either use fromURL(final URL url, final List<UrlType> urlTypes) or use the static setDefaultURLTypes(final List<UrlType> urlTypes) or addDefaultURLTypes(UrlType urlType) with your specialized UrlType.
at org.reflections.vfs.Vfs.fromURL(Vfs.java:108)
at org.reflections.vfs.Vfs.fromURL(Vfs.java:90)
at org.reflections.Reflections.scan(Reflections.java:236)
at org.reflections.Reflections.scan(Reflections.java:203)
at org.reflections.Reflections.<init>(Reflections.java:128)
at org.reflections.Reflections.<init>(Reflections.java:169)
at org.reflections.Reflections.<init>(Reflections.java:142)
at com.github.mongobee.utils.ChangeService.fetchChangeLogs(ChangeService.java:43)
at com.github.mongobee.Mongobee.execute(Mongobee.java:142)
at com.github.mongobee.Mongobee.afterPropertiesSet(Mongobee.java:117)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1637)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1574)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:545)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:482)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197)
at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:776)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:861)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:541)
at org.springframework.boot.context.embedded.EmbeddedWebApplicationContext.refresh(EmbeddedWebApplicationContext.java:122)
at org.springframework.boot.SpringApplication.refresh(SpringApplication.java:759)
at org.springframework.boot.SpringApplication.refreshContext(SpringApplication.java:369)
at org.springframework.boot.SpringApplication.run(SpringApplication.java:313)
at com.xx.cloud.demo.ResourceApp.main(ResourceApp.java:66)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.springframework.boot.maven.AbstractRunMojo$LaunchRunner.run(AbstractRunMojo.java:483)
at java.lang.Thread.run(Thread.java:745)

It may be late but I got the same issue and solved it by
checking package scan change logs declared in class DatabaseConfiguration
// package to scan for migrations
mongobee.setChangeLogsScanPackage("com.jhipster.web.config.dbmigrations");
Example here package is "com.jhipster.web.config.dbmigrations". Go to that package and create a class like this:
package com.jhipster.web.config.dbmigrations;
import com.github.mongobee.changeset.ChangeLog;
#ChangeLog
public class DatabaseChangelog {
}
Then the warning/error will gone.

Related

Redhawk V3 - IDE Not displaying domain correctly

On a fresh install of Redhawk version 3 everything appears to be working and interacting with the domain works fine through Python. I appreciate the IDE has been deprecated but I am wondering if there is a fix to an issue when inspecting the domain. When connecting to a domain the IDE is producing the following error
Failed to fetch profile object from profile path: 'sca:///domain/DomainManager.dmd.xml?domain=REDHAWK_DEV&fs=IOR%3A000000000000001749444C3A43462F46696C654D616E616765723A312E300000000000010000000000000070010102000B00000031302E31312E322E3132000022CC00001C000000FF446F6D61696E4D616E61676572FEDD11376201003E5C00000000000200000000000000080000000100000000545441010000001C00000001000000010001000100000001000105090101000100000009010100#/'
The full stack indicates it is trying to access a file that doesn't exist (DomainManager.dmd.xml, which doesn't exist), full stack
org.eclipse.emf.ecore.resource.impl.ResourceSetImpl$1DiagnosticWrappedException: org.eclipse.core.runtime.CoreException: File cache error: /home/centos/workspace/.metadata/.plugins/gov.redhawk.sca.efs/fileCache/sdr_REDHAWK_DEV/dom/domain/DomainManager.dmd.xml at org.eclipse.emf.ecore.resource.impl.ResourceSetImpl.handleDemandLoadException(ResourceSetImpl.java:319) at org.eclipse.emf.ecore.resource.impl.ResourceSetImpl.demandLoadHelper(ResourceSetImpl.java:278) at org.eclipse.emf.ecore.resource.impl.ResourceSetImpl.getResource(ResourceSetImpl.java:406) at org.eclipse.emf.ecore.resource.impl.ResourceSetImpl.getEObject(ResourceSetImpl.java:220) at gov.redhawk.model.sca.ProfileObjectWrapper$Util.fetchProfileObject(ProfileObjectWrapper.java:225) at gov.redhawk.model.sca.impl.ScaPropertyContainerImpl.fetchProfileObject(ScaPropertyContainerImpl.java:379) at gov.redhawk.model.sca.impl.ScaPropertyContainerImpl.fetchPropertyDefinitions(ScaPropertyContainerImpl.java:708) at gov.redhawk.model.sca.impl.ScaPropertyContainerImpl.fetchProperties(ScaPropertyContainerImpl.java:611) at gov.redhawk.model.sca.impl.ScaDomainManagerImpl.fetchAttributes(ScaDomainManagerImpl.java:2187) at gov.redhawk.model.sca.impl.CorbaObjWrapperImpl.refresh(CorbaObjWrapperImpl.java:761) at gov.redhawk.sca.model.provider.refresh.internal.RefresherSwitch$1.refresh(RefresherSwitch.java:90) at gov.redhawk.sca.model.provider.refresh.internal.RefresherSwitch$1.refresh(RefresherSwitch.java:84) at gov.redhawk.sca.model.provider.refresh.internal.RefreshTasker.refresh(RefreshTasker.java:264) at gov.redhawk.sca.model.provider.refresh.internal.RefreshTasker$RefreshTask.run(RefreshTasker.java:214) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$201(ScheduledThreadPoolExecutor.java:180) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:293) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:750) Caused by: org.eclipse.core.runtime.CoreException: File cache error: /home/centos/workspace/.metadata/.plugins/gov.redhawk.sca.efs/fileCache/sdr_REDHAWK_DEV/dom/domain/DomainManager.dmd.xml at gov.redhawk.efs.sca.internal.cache.FileCache.downloadFile(FileCache.java:159) at gov.redhawk.efs.sca.internal.cache.FileCache.update(FileCache.java:74) at gov.redhawk.efs.sca.internal.cache.FileCache.openInputStream(FileCache.java:84) at gov.redhawk.efs.sca.internal.ScaFileStore.openInputStream(ScaFileStore.java:306) at sun.reflect.GeneratedMethodAccessor25.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.eclipse.emf.ecore.resource.impl.EFSURIHandlerImpl.createInputStream(EFSURIHandlerImpl.java:249) at org.eclipse.emf.ecore.resource.impl.ExtensibleURIConverterImpl.createInputStream(ExtensibleURIConverterImpl.java:360) at org.eclipse.emf.ecore.resource.impl.ResourceImpl.load(ResourceImpl.java:1314) at org.eclipse.emf.ecore.resource.impl.ResourceSetImpl.demandLoad(ResourceSetImpl.java:259) at org.eclipse.emf.ecore.resource.impl.ResourceSetImpl.demandLoadHelper(ResourceSetImpl.java:274) ... 19 more Caused by: java.util.concurrent.ExecutionException: org.omg.CORBA.MARSHAL: Server-side Exception: null vmcid: 0x41540000 minor code: 10 completed: No at mil.jpeojtrs.sca.util.ProtectedThreadExecutor.submit(ProtectedThreadExecutor.java:86) at gov.redhawk.efs.sca.internal.cache.FileCache.readProtected(FileCache.java:199) at gov.redhawk.efs.sca.internal.cache.FileCache.copyLarge(FileCache.java:187) at gov.redhawk.efs.sca.internal.cache.FileCache.downloadFile(FileCache.java:137) ... 30 more Caused by: org.omg.CORBA.MARSHAL: Server-side Exception: null vmcid: 0x41540000 minor code: 10 completed: No at sun.reflect.GeneratedConstructorAccessor26.newInstance(Unknown Source) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) at java.lang.reflect.Constructor.newInstance(Constructor.java:423) at org.jacorb.orb.SystemExceptionHelper.read(SystemExceptionHelper.java:222) at org.jacorb.orb.ReplyReceiver.getReply(ReplyReceiver.java:456) at org.jacorb.orb.Delegate._invoke_internal(Delegate.java:1419) at org.jacorb.orb.Delegate.invoke_internal(Delegate.java:1188) at org.jacorb.orb.Delegate.invoke(Delegate.java:1176) at org.omg.CORBA.portable.ObjectImpl._invoke(ObjectImpl.java:475) at CF._FileStub.read(_FileStub.java:66) at gov.redhawk.efs.sca.internal.ScaFileInputStream.read(ScaFileInputStream.java:84) at java.io.InputStream.read(InputStream.java:101) at gov.redhawk.efs.sca.internal.cache.FileCache$1.call(FileCache.java:203) at gov.redhawk.efs.sca.internal.cache.FileCache$1.call(FileCache.java:1) at mil.jpeojtrs.sca.util.ProtectedThreadExecutor.submit(ProtectedThreadExecutor.java:84) ... 33 more
Confirmed files exist on Redhawk V2 system, removed and re-added workspace directory
It seems that the issue was fixed in v3.0.1 - https://github.com/RedhawkSDR/redhawk/releases/tag/3.0.1.
The effort in REDHAWK 3.0.1 focused on:
Replace log4j with reload4j in the Core Framework and in the IDE.
Resolved bug preventing fei3-generator from generating python code
Resolved bug preventing IDE from connecting to a running redhawk-3.0.0 domain

Apache Zeppelin: How to manage dependencies for groovy interpreter

I've use Apache Zeppelin 0.8.1.
I want user Groovy interpreter. And use #Grape dep menagement:
%groovy
#Grapes([
#Grab('com.github.twosigma.beakerx:beaker-kernel-groovy:0.9.0')
])
import com.twosigma.beakerx.widget.IntSlider
But got error:
java.lang.RuntimeException: Failed to parse groovy script: java.lang.NoClassDefFoundError: org/apache/ivy/Ivy
at org.apache.zeppelin.groovy.GroovyInterpreter.getGroovyScript(GroovyInterpreter.java:140)
Reasonable. By official documentation of Dependency Management for Interpreter I've provide artifact dep: org.apache.ivy:ivy:2.5.0-rc1:
In repositories I have enabled Central (http://repo1.maven.org/maven2/) which have that artifact:
But on interpreter restarting and notebook reload I just got error: Error setting properties for interpreter 'groovy.groovy': Cannot fetch dependencies for org.apache.ivy:ivy:2.5.0-rc1:
I have tried (as experiment, not long-term solution) enter into zeppelin docker container and download http://repo1.maven.org/maven2/org/apache/ivy/ivy/2.5.0-rc1/ivy-2.5.0-rc1.jar into /zeppelin/interpreter/groovy, restart interpreter, reload nootebook and it looks like groovy try resolve deps - i see progress-bar for second, but then again got error:
java.lang.RuntimeException: Failed to parse groovy script: org.codehaus.groovy.control.MultipleCompilationErrorsException: startup failed: General error during conversion: Error grabbing Grapes -- [unresolved dependency: com.github.twosigma.beakerx#beaker-kernel-groovy;0.9.0: not found] java.lang.RuntimeException: Error grabbing Grapes -- [unresolved dependency: com.github.twosigma.beakerx#beaker-kernel-groovy;0.9.0: not found] at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) at java.lang.reflect.Constructor.newInstance(Constructor.java:423) at org.codehaus.groovy.reflection.CachedConstructor.invoke(CachedConstructor.java:83) at org.codehaus.groovy.reflection.CachedConstructor.doConstructorInvoke(CachedConstructor.java:77) at org.codehaus.groovy.runtime.callsite.ConstructorSite$ConstructorSiteNoUnwrap.callConstructor(ConstructorSite.java:84) at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCallConstructor(CallSiteArray.java:60) at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callConstructor(AbstractCallSite.java:235) at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callConstructor(AbstractCallSite.java:247) at groovy.grape.GrapeIvy.getDependencies(GrapeIvy.groovy:426) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.codehaus.groovy.runtime.callsite.PogoMetaMethodSite$PogoCachedMethodSite.invoke(PogoMetaMethodSite.java:169) at org.codehaus.groovy.runtime.callsite.PogoMetaMethodSite.callCurrent(PogoMetaMethodSite.java:59) at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCallCurrent(CallSiteArray.java:52) at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callCurrent(AbstractCallSite.java:154) at groovy.grape.GrapeIvy.resolve(GrapeIvy.groovy:573) at groovy.grape.GrapeIvy$resolve$1.callCurrent(Unknown Source) at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCallCurrent(CallSiteArray.java:52) at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callCurrent(AbstractCallSite.java:154) at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callCurrent(AbstractCallSite.java:190) at groovy.grape.GrapeIvy.resolve(GrapeIvy.groovy:540) at groovy.grape.GrapeIvy$resolve$0.callCurrent(Unknown Source) at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCallCurrent(CallSiteArray.java:52) at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callCurrent(AbstractCallSite.java:154) at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callCurrent(AbstractCallSite.java:182) at groovy.grape.GrapeIvy.grab(GrapeIvy.groovy:258) at groovy.grape.Grape.grab(Grape.java:167) at groovy.grape.GrabAnnotationTransformation.visit(GrabAnnotationTransformation.java:378) at org.codehaus.groovy.transform.ASTTransformationVisitor$3.call(ASTTransformationVisitor.java:321) at org.codehaus.groovy.control.CompilationUnit.applyToSourceUnits(CompilationUnit.java:931) at org.codehaus.groovy.control.CompilationUnit.doPhaseOperation(CompilationUnit.java:593) at org.codehaus.groovy.control.CompilationUnit.processPhaseOperations(CompilationUnit.java:569) at org.codehaus.groovy.control.CompilationUnit.compile(CompilationUnit.java:546) at groovy.lang.GroovyClassLoader.doParseClass(GroovyClassLoader.java:298) at groovy.lang.GroovyClassLoader.parseClass(GroovyClassLoader.java:268) at groovy.lang.GroovyShell.parseClass(GroovyShell.java:688) at groovy.lang.GroovyShell.parse(GroovyShell.java:700) at groovy.lang.GroovyShell.parse(GroovyShell.java:736) at org.apache.zeppelin.groovy.GroovyInterpreter.getGroovyScript(GroovyInterpreter.java:133) at org.apache.zeppelin.groovy.GroovyInterpreter.interpret(GroovyInterpreter.java:155) at org.apache.zeppelin.interpreter.LazyOpenInterpreter.interpret(LazyOpenInterpreter.java:103) at org.apache.zeppelin.interpreter.remote.RemoteInterpreterServer$InterpretJob.jobRun(RemoteInterpreterServer.java:632) at org.apache.zeppelin.scheduler.Job.run(Job.java:188) at org.apache.zeppelin.scheduler.ParallelScheduler$JobRunner.run(ParallelScheduler.java:162) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$201(ScheduledThreadPoolExecutor.java:180) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:293) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748) 1 error at org.apache.zeppelin.groovy.GroovyInterpreter.getGroovyScript(GroovyInterpreter.java:140)
It looks like groovy does not see repository configurations and try resolve dependencies only locally.
What I should setup to change that?
groovy in zeppelin not designed to support #Grab
your artifact is present in a specific repository
http://maven.imagej.net/content/repositories/public/
check this artifact search engine:
https://mvnrepository.com/artifact/com.github.twosigma.beakerx/beaker-kernel-groovy/0.9.0
so, just add a new repo to zeppelin
UPD:
for org.apache.ivy:ivy:2.5.0-rc1 there are a lot of dependencies downloaded
and one of them fails. Here is what I see in console:
Error while downloading repos for interpreter group : groovy,
go to interpreter setting page click on edit and save it again
to make this interpreter work properly:
Cannot fetch dependencies for org.apache.ivy:ivy:2.5.0-rc1
...
Caused by: org.sonatype.aether.resolution.DependencyResolutionException:
Could not find artifact com.jcraft:jsch.agentproxy:jar:0.0.9 in central
(http://repo1.maven.org/maven2/)
...
(IHMO it's a bug of zeppelin)
but to make it work set
artifact= org.apache.ivy:ivy:2.4.0
exclude= com.jcraft:jsch.agentproxy

Error when connecting mylyn Gitlab connector to Eclipse

I'm trying to configure the Mylyn Gitlab Connector for Eclipse Oxygen v4.7.1a but when I try to add a new task it throws me an exception and it does not let me continue with the creation of the new task.
Enter correctly my data and the url address of the gitlab repository and even probe with several url and with all of them throw me the same exception.
Exception Stack Trace:
java.lang.reflect.InvocationTargetException
at org.eclipse.jface.operation.ModalContext.run(ModalContext.java:398)
at org.eclipse.jface.wizard.WizardDialog.run(WizardDialog.java:980)
at org.eclipse.mylyn.tasks.ui.wizards.NewTaskWizard.performFinish(NewTaskWizard.java:113)
at org.eclipse.mylyn.internal.tasks.ui.wizards.SelectRepositoryPage.performFinish(SelectRepositoryPage.java:295)
at org.eclipse.mylyn.internal.tasks.ui.wizards.MultiRepositoryAwareWizard.performFinish(MultiRepositoryAwareWizard.java:53)
at org.eclipse.jface.wizard.WizardDialog.finishPressed(WizardDialog.java:778)
at org.eclipse.jface.wizard.WizardDialog.buttonPressed(WizardDialog.java:417)
at org.eclipse.jface.dialogs.Dialog.lambda$0(Dialog.java:619)
at org.eclipse.swt.events.SelectionListener$1.widgetSelected(SelectionListener.java:81)
at org.eclipse.swt.widgets.TypedListener.handleEvent(TypedListener.java:249)
at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:86)
at org.eclipse.swt.widgets.Display.sendEvent(Display.java:5268)
at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1348)
at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:4522)
at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:4107)
at org.eclipse.jface.window.Window.runEventLoop(Window.java:818)
at org.eclipse.jface.window.Window.open(Window.java:794)
at org.eclipse.mylyn.tasks.ui.TasksUiUtil.openNewTaskEditor(TasksUiUtil.java:237)
at org.eclipse.mylyn.tasks.ui.TasksUiUtil.openNewTaskEditor(TasksUiUtil.java:253)
at org.eclipse.mylyn.internal.tasks.ui.actions.NewTaskAction.run(NewTaskAction.java:95)
at org.eclipse.mylyn.internal.tasks.ui.actions.NewTaskAction.run(NewTaskAction.java:102)
at org.eclipse.ui.internal.PluginAction.runWithEvent(PluginAction.java:247)
at org.eclipse.jface.action.ActionContributionItem.handleWidgetSelection(ActionContributionItem.java:565)
at org.eclipse.jface.action.ActionContributionItem.lambda$4(ActionContributionItem.java:397)
at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:86)
at org.eclipse.swt.widgets.Display.sendEvent(Display.java:5268)
at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1348)
at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:4522)
at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:4107)
at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine$5.run(PartRenderingEngine.java:1150)
at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.run(PartRenderingEngine.java:1039)
at org.eclipse.e4.ui.internal.workbench.E4Workbench.createAndRunUI(E4Workbench.java:153)
at org.eclipse.ui.internal.Workbench.lambda$3(Workbench.java:680)
at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:594)
at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:148)
at org.eclipse.ui.internal.ide.application.IDEApplication.start(IDEApplication.java:151)
at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:653)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:590)
at org.eclipse.equinox.launcher.Main.run(Main.java:1499)
at org.eclipse.equinox.launcher.Main.main(Main.java:1472)
Caused by: java.lang.Error: de.weingardt.mylyn.gitlab.core.exceptions.GitlabException: Invalid path in host
at de.weingardt.mylyn.gitlab.core.GitlabTaskDataHandler.getAttributeMapper(GitlabTaskDataHandler.java:67)
at org.eclipse.mylyn.internal.tasks.ui.util.TasksUiInternal.createTaskData(TasksUiInternal.java:872)
at org.eclipse.mylyn.tasks.ui.wizards.NewTaskWizard$1.run(NewTaskWizard.java:103)
at org.eclipse.jface.operation.ModalContext$ModalContextThread.run(ModalContext.java:119)
Caused by: de.weingardt.mylyn.gitlab.core.exceptions.GitlabException: Invalid path in host
at de.weingardt.mylyn.gitlab.core.exceptions.GitlabExceptionHandler.handle(GitlabExceptionHandler.java:20)
at de.weingardt.mylyn.gitlab.core.ConnectionManager.validate(ConnectionManager.java:139)
at de.weingardt.mylyn.gitlab.core.ConnectionManager.get(ConnectionManager.java:159)
at de.weingardt.mylyn.gitlab.core.ConnectionManager.get(ConnectionManager.java:45)
at de.weingardt.mylyn.gitlab.core.GitlabTaskDataHandler.getAttributeMapper(GitlabTaskDataHandler.java:65)
... 3 more
Any suggestions on how to solve this problem?
Right click on Mylyn repository and select Repository -> Properties
Expand Additional Settings and check "Use private token"
works well for me.
Eclipse Oxygen.2 Release (4.7.2)

class com.google.protobuf.HBaseZeroCopyByteString cannot access its superclass com.google.protobuf.LiteralByteString

I am getting the below error when running the spark application:
16/01/08 15:25:48 INFO SchemaMetadata: Entering synchronized block to initiate
16/01/08 15:25:48 INFO SchemaMetadata: Initializing SchemaMetadata
16/01/08 15:25:48 INFO SchemaMetadata: Schema initialized from database
16/01/08 15:25:48 INFO SchemaMetadata: Registering for notifications
16/01/08 15:25:49 WARN HConnectionManager$HConnectionImplementation: Encountered problems when prefetch hbase:meta table:
org.apache.hadoop.hbase.DoNotRetryIOException: java.lang.IllegalAccessError: class com.google.protobuf.HBaseZeroCopyByteString cannot access its superclass com.google.protobuf.LiteralByteString
at org.apache.hadoop.hbase.client.RpcRetryingCaller.translateException(RpcRetryingCaller.java:210)
at org.apache.hadoop.hbase.client.RpcRetryingCaller.callWithRetries(RpcRetryingCaller.java:121)
at org.apache.hadoop.hbase.client.HTable.getRowOrBefore(HTable.java:714)
at org.apache.hadoop.hbase.client.MetaScanner.metaScan(MetaScanner.java:144)
at org.apache.hadoop.hbase.client.HConnectionManager$HConnectionImplementation.prefetchRegionCache(HConnectionManager.java:1159)
at org.apache.hadoop.hbase.client.HConnectionManager$HConnectionImplementation.locateRegionInMeta(HConnectionManager.java:1223)
at org.apache.hadoop.hbase.client.HConnectionManager$HConnectionImplementation.locateRegion(HConnectionManager.java:1111)
at org.apache.hadoop.hbase.client.HConnectionManager$HConnectionImplementation.locateRegion(HConnectionManager.java:1068)
at org.apache.hadoop.hbase.client.AsyncProcess.findDestLocation(AsyncProcess.java:361)
at org.apache.hadoop.hbase.client.AsyncProcess.submit(AsyncProcess.java:306)
at org.apache.hadoop.hbase.client.HTable.backgroundFlushCommits(HTable.java:964)
at org.apache.hadoop.hbase.client.HTable.flushCommits(HTable.java:1252)
at org.apache.hadoop.hbase.client.HTable.put(HTable.java:924)
Caused by: java.lang.IllegalAccessError: class com.google.protobuf.HBaseZeroCopyByteString cannot access its superclass com.google.protobuf.LiteralByteString
at java.lang.ClassLoader.defineClass1(Native Method)
at java.lang.ClassLoader.defineClass(ClassLoader.java:800)
at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
at java.net.URLClassLoader.defineClass(URLClassLoader.java:449)
at java.net.URLClassLoader.access$100(URLClassLoader.java:71)
at java.net.URLClassLoader$1.run(URLClassLoader.java:361)
at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
at org.apache.hadoop.hbase.protobuf.RequestConverter.buildRegionSpecifier(RequestConverter.java:930)
at org.apache.hadoop.hbase.protobuf.RequestConverter.buildGetRowOrBeforeRequest(RequestConverter.java:133)
at org.apache.hadoop.hbase.protobuf.ProtobufUtil.getRowOrBefore(ProtobufUtil.java:1497)
at org.apache.hadoop.hbase.client.HTable$2.call(HTable.java:710)
at org.apache.hadoop.hbase.client.HTable$2.call(HTable.java:708)
at org.apache.hadoop.hbase.client.RpcRetryingCaller.callWithRetries(RpcRetryingCaller.java:114)
... 31 more
The problem here i found is the class loader is loading the LiteralByteString class from Spark assembly jar earlier in the JVM and then loading the HBaseZeroCopyByteString class from the user jar. That's why it is creating the problem.
Spark provide one property to load the user jar first in JVM that is spark.executor.userClassPathFirst, But unfortunately not getting luck in this as well.
Please suggest solution if anyone has encountered and resolved this problem.
It's looking that while running spark job they didn't found hbase-protocol jar in class-path.
Please try below options to solve given issue,
export HADOOP_CLASSPATH=/usr/hdp/2.5.4.0-121/hbase/lib/hbase-protocol-1.1.2.2.5.4.0-121.jar
Add below properties in spark-submit
--driver-class-path /usr/hdp/2.5.4.0-121/hbase/lib/hbase-protocol-1.1.2.2.5.4.0-121.jar \
--driver-java-options "-Dspark.driver.extraClassPath=/usr/hdp/2.5.4.0-121/hbase/lib/hbase-protocol-1.1.2.2.5.4.0-121.jar" \
--conf "spark.executor.extraClassPath=/usr/hdp/2.5.4.0-121/hbase/lib/hbase-protocol-1.1.2.2.5.4.0-121.jar" \
Hope so your problem will be solve. Please reply me if in case any query..

how to upgrade standalone version of graylog

I want to upgrade my standalone graylog2 instance from 1.1.5 to 1.2.1.
I unpacked the new version, copy the old graylog.conf file and data/ directory and after I start the new version I get some errors.
For example if I go to the indices page the graylog-webinterface log says:
Caught Exception while deserializing JSON request:
com.fasterxml.jackson.databind.JsonMappingException: Instantiation of [simple type, class org.graylog2.rest.models.system.indexer.responses.IndexRangeSummary] value failed: Null indexName (through reference chain: org.graylog2.rest.models.system.indexer.responses.IndexRangesResponse["ranges"]->java.util.ArrayList[0])
.
.
.
Caused by: java.lang.NullPointerException: Null indexName
at org.graylog2.rest.models.system.indexer.responses.AutoValue_IndexRangeSummary.<init>(AutoValue_IndexRangeSummary.java:21) ~[org.graylog2.graylog2-rest-models-1.1.5.jar:na]
at org.graylog2.rest.models.system.indexer.responses.IndexRangeSummary.create(IndexRangeSummary.java:47) ~[org.graylog2.graylog2-rest-models-1.1.5.jar:na]
at sun.reflect.GeneratedMethodAccessor59.invoke(Unknown Source) ~[na:na]
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.8.0_51]
at java.lang.reflect.Method.invoke(Method.java:497) ~[na:1.8.0_51]
at com.fasterxml.jackson.databind.introspect.AnnotatedMethod.call(AnnotatedMethod.java:120) ~[com.fasterxml.jackson.core.jackson-databind-2.5.3.jar:2.5.3]
at com.fasterxml.jackson.databind.deser.std.StdValueInstantiator.createFromObjectWith(StdValueInstantiator.java:227) ~[com.fasterxml.jackson.core.jackson-databind-2.5.3.jar:2.5.3]
... 61 common frames omitted
What can I do?
Please check whether you also updated the graylog web.

Resources