Search only delivers media items after Sitecore Update - search

We updated our Sitecore CMS from version 6.3 to 6.6 SP2. This Sitecore version has the Intranet Module installed. Everything is working fine, but the Lucene Search doesn't seem to work properly.
There are two indexes defined. One for the whole content tree and one for the media library. The search only delivers results with media items (images, PDFs), but no pages. With the tool Luke I'm able to look into the indexes and I see the items there. But they are not in the search results on the website anymore.
I rebuilt the search indexes using the Sitecore Control Panel, but that didn't help.
As I said, it was working fine on Sitecore 6.3, but not on the updated 6.6 SP2.
Any idea what could be the problem?
Thanks in advance :)

Here is a blog post about Troubleshooting Sitecore Lucene search and indexing .
In shortcut:
Check if items are indexed correctly either using Luke.
Check if MatchAll query return page items:
SearchManager.GetIndex("your_index_name").CreateSearchContext()
.Search(new MatchAllDocsQuery(), int.MaxValue)
.FetchResults(0, int.MaxValue).Select(r => r.GetObject<Item>())
Check included templates:
<include hint="list:IncludeTemplate">

It turned out that the 3 missing fields _sclsMedia, _sclsSearchable and _scLang in the Content Lucene Index that are causing the search not to function. So I removed the 3 fields from the code in my solution and now I get search results again.
The question is why were those 3 fields lost during the update from Sitecore 6.3 to 6.6.

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