bento start command fails with NoClassDefFoundError DNSCheckingTool - cassandra

I was trying out the tutorial in https://github.com/kijiproject/kiji-schema/blob/master/kiji-schema-cassandra/cassandra_tutorial.md
but got stuck at the place where we start the bento box. 'bento start'
It gives the following error:
cygpath: cannot create short name of c:\276273\WorkingFolder\Cassandra\cassandra
-bento\kiji-bento-ebi\cluster\lib\hbase-0.94.6-cdh4.3.0\logs
Running bento-cluster port configuration utility.
bento: line 620: /cygdrive/c/jdk1.6.0/bin/java: Argument list too long
Exception in thread "main" java.lang.NoClassDefFoundError: org/kiji/bento/tools/
DNSCheckingTool
Caused by: java.lang.ClassNotFoundException: org.kiji.bento.tools.DNSCheckingToo
l
at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
at java.lang.ClassLoader.loadClass(ClassLoader.java:306)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:301)
at java.lang.ClassLoader.loadClass(ClassLoader.java:247)
Could not find the main class: org.kiji.bento.tools.DNSCheckingTool. Program wi
ll exit.
Local DNS check failed. Please resolve and try again.
Can you please help?

please see https://jira.kiji.org/browse/CLUSTER-39, comment invoke set mutate_classpath variable with hbase_cp.

Related

Error when connecting mylyn Gitlab connector to Eclipse

I'm trying to configure the Mylyn Gitlab Connector for Eclipse Oxygen v4.7.1a but when I try to add a new task it throws me an exception and it does not let me continue with the creation of the new task.
Enter correctly my data and the url address of the gitlab repository and even probe with several url and with all of them throw me the same exception.
Exception Stack Trace:
java.lang.reflect.InvocationTargetException
at org.eclipse.jface.operation.ModalContext.run(ModalContext.java:398)
at org.eclipse.jface.wizard.WizardDialog.run(WizardDialog.java:980)
at org.eclipse.mylyn.tasks.ui.wizards.NewTaskWizard.performFinish(NewTaskWizard.java:113)
at org.eclipse.mylyn.internal.tasks.ui.wizards.SelectRepositoryPage.performFinish(SelectRepositoryPage.java:295)
at org.eclipse.mylyn.internal.tasks.ui.wizards.MultiRepositoryAwareWizard.performFinish(MultiRepositoryAwareWizard.java:53)
at org.eclipse.jface.wizard.WizardDialog.finishPressed(WizardDialog.java:778)
at org.eclipse.jface.wizard.WizardDialog.buttonPressed(WizardDialog.java:417)
at org.eclipse.jface.dialogs.Dialog.lambda$0(Dialog.java:619)
at org.eclipse.swt.events.SelectionListener$1.widgetSelected(SelectionListener.java:81)
at org.eclipse.swt.widgets.TypedListener.handleEvent(TypedListener.java:249)
at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:86)
at org.eclipse.swt.widgets.Display.sendEvent(Display.java:5268)
at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1348)
at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:4522)
at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:4107)
at org.eclipse.jface.window.Window.runEventLoop(Window.java:818)
at org.eclipse.jface.window.Window.open(Window.java:794)
at org.eclipse.mylyn.tasks.ui.TasksUiUtil.openNewTaskEditor(TasksUiUtil.java:237)
at org.eclipse.mylyn.tasks.ui.TasksUiUtil.openNewTaskEditor(TasksUiUtil.java:253)
at org.eclipse.mylyn.internal.tasks.ui.actions.NewTaskAction.run(NewTaskAction.java:95)
at org.eclipse.mylyn.internal.tasks.ui.actions.NewTaskAction.run(NewTaskAction.java:102)
at org.eclipse.ui.internal.PluginAction.runWithEvent(PluginAction.java:247)
at org.eclipse.jface.action.ActionContributionItem.handleWidgetSelection(ActionContributionItem.java:565)
at org.eclipse.jface.action.ActionContributionItem.lambda$4(ActionContributionItem.java:397)
at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:86)
at org.eclipse.swt.widgets.Display.sendEvent(Display.java:5268)
at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1348)
at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:4522)
at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:4107)
at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine$5.run(PartRenderingEngine.java:1150)
at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.run(PartRenderingEngine.java:1039)
at org.eclipse.e4.ui.internal.workbench.E4Workbench.createAndRunUI(E4Workbench.java:153)
at org.eclipse.ui.internal.Workbench.lambda$3(Workbench.java:680)
at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:594)
at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:148)
at org.eclipse.ui.internal.ide.application.IDEApplication.start(IDEApplication.java:151)
at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:653)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:590)
at org.eclipse.equinox.launcher.Main.run(Main.java:1499)
at org.eclipse.equinox.launcher.Main.main(Main.java:1472)
Caused by: java.lang.Error: de.weingardt.mylyn.gitlab.core.exceptions.GitlabException: Invalid path in host
at de.weingardt.mylyn.gitlab.core.GitlabTaskDataHandler.getAttributeMapper(GitlabTaskDataHandler.java:67)
at org.eclipse.mylyn.internal.tasks.ui.util.TasksUiInternal.createTaskData(TasksUiInternal.java:872)
at org.eclipse.mylyn.tasks.ui.wizards.NewTaskWizard$1.run(NewTaskWizard.java:103)
at org.eclipse.jface.operation.ModalContext$ModalContextThread.run(ModalContext.java:119)
Caused by: de.weingardt.mylyn.gitlab.core.exceptions.GitlabException: Invalid path in host
at de.weingardt.mylyn.gitlab.core.exceptions.GitlabExceptionHandler.handle(GitlabExceptionHandler.java:20)
at de.weingardt.mylyn.gitlab.core.ConnectionManager.validate(ConnectionManager.java:139)
at de.weingardt.mylyn.gitlab.core.ConnectionManager.get(ConnectionManager.java:159)
at de.weingardt.mylyn.gitlab.core.ConnectionManager.get(ConnectionManager.java:45)
at de.weingardt.mylyn.gitlab.core.GitlabTaskDataHandler.getAttributeMapper(GitlabTaskDataHandler.java:65)
... 3 more
Any suggestions on how to solve this problem?
Right click on Mylyn repository and select Repository -> Properties
Expand Additional Settings and check "Use private token"
works well for me.
Eclipse Oxygen.2 Release (4.7.2)

how to Use jdb to analyze the coredump file

There is a coredump file created in one machine, But when i move it to other machine (which have the same java version), use the same command to analyze, it faild.
the command is like that below,
db -connect sun.jvm.hotspot.jdi.SACoreAttachingConnector:javaExecutable=/home/xxxx/app/jdk1.6.0_31/bin/java,core=core.java.1409350847.30890
and the error message is:
java.io.IOException at
sun.jvm.hotspot.jdi.SACoreAttachingConnector.attach(SACoreAttachingConnector.java:139)
at
com.sun.tools.example.debug.tty.VMConnection.attachTarget(VMConnection.java:358)
at
com.sun.tools.example.debug.tty.VMConnection.open(VMConnection.java:168)
at com.sun.tools.example.debug.tty.Env.init(Env.java:64) at
com.sun.tools.example.debug.tty.TTY.main(TTY.java:1010)
Caused by:
java.lang.reflect.InvocationTargetException at
sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597) at
sun.jvm.hotspot.jdi.SACoreAttachingConnector.createVirtualMachine(SACoreAttachingConnector.java:96)
at
sun.jvm.hotspot.jdi.SACoreAttachingConnector.attach(SACoreAttachingConnector.java:124)
... 4 more
Caused by: sun.jvm.hotspot.debugger.DebuggerException:
Doesn't appear to be a HotSpot VM (could not find symbol
"gHotSpotVMTypes" in remote process) at
sun.jvm.hotspot.HotSpotAgent.setupVM(HotSpotAgent.java:400) at
sun.jvm.hotspot.HotSpotAgent.go(HotSpotAgent.java:315) at
sun.jvm.hotspot.HotSpotAgent.attach(HotSpotAgent.java:174) at
sun.jvm.hotspot.jdi.VirtualMachineImpl.createVirtualMachineForCorefile(VirtualMachineImpl.java:206)
... 10 more
who can tell me why? Thanks very much.

Exception while creating the image using JAI library in shell script

When I work with JAI from the Eclipse (all the classes specified) it works very fine, but when I bundle everything in a jar and make a shell script file from that and try to run that script I have a problem with javax.media.jai.OperationRegistry looking for a initialization file.
Has anyone else seen this problem?
Exception:
Exception in thread "AWT-EventQueue-0" java.lang.ExceptionInInitializerError
at javax.media.jai.TiledImage.<init>(TiledImage.java:259)
at javax.media.jai.TiledImage.<init>(TiledImage.java:222)
at org.syntec.ivb.img.SingleShot.<init>(SingleShot.java:75)
at org.syntec.ivb.jni.GetCapture.<init>(GetCapture.java:21)
at org.syntec.ivb.application.SampleWindow$4.actionPerformed(SampleWindow.java:178)
at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2012)
at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2335)
at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:404)
at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:252)
at java.awt.Component.processMouseEvent(Component.java:6288)
at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
at java.awt.Component.processEvent(Component.java:6053)
at java.awt.Container.processEvent(Container.java:2045)
at java.awt.Component.dispatchEventImpl(Component.java:4649)
at java.awt.Container.dispatchEventImpl(Container.java:2103)
at java.awt.Component.dispatchEvent(Component.java:4475)
at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4633)
at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4297)
at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4227)
at java.awt.Container.dispatchEventImpl(Container.java:2089)
at java.awt.Window.dispatchEventImpl(Window.java:2587)
at java.awt.Component.dispatchEvent(Component.java:4475)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:675)
at java.awt.EventQueue.access$300(EventQueue.java:96)
at java.awt.EventQueue$2.run(EventQueue.java:634)
at java.awt.EventQueue$2.run(EventQueue.java:632)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:105)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:116)
at java.awt.EventQueue$3.run(EventQueue.java:648)
at java.awt.EventQueue$3.run(EventQueue.java:646)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:105)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:645)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:275)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:200)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:190)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:185)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:177)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:138)
Caused by: java.lang.RuntimeException: Registry initialization file not found.
at javax.media.jai.OperationRegistry.initializeRegistry(OperationRegistry.java:365)
at javax.media.jai.JAI.<clinit>(JAI.java:566)
... 41 more

Hadoop HDFS test running issue - org.apache.hadoop.conf.Configuration NoClassDefFoundError

I'm working with Hadoop 0.21.0. and trying to run the hdfs_test application that comes alongside the C API library. After many problems I was able to compile hdfs_test. Now when I'm running it:
./hdfs_test
I'm getting the following error:
Exception in thread "main" java.lang.NoClassDefFoundError: org/apache/commons/logging/LogFactory
at org.apache.hadoop.conf.Configuration.<clinit>(Configuration.java:153)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.logging.LogFactory
at java.net.URLClassLoader$1.run(URLClassLoader.java:217)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:205)
at java.lang.ClassLoader.loadClass(ClassLoader.java:321)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:294)
at java.lang.ClassLoader.loadClass(ClassLoader.java:266)
... 1 more
Can't construct instance of class org.apache.hadoop.conf.Configuration
Oops! Failed to connect to hdfs!
Any help is appreciated.. thanks
Like any other Java program you need the dependencies in the classpath or inside the jar. Hadoop also has an HADOOP_CLASSPATH to tell the cluster where to find dependencies in map-reduce tasks. Also see How to run a Hadoop program?

Pig Cassandra cluster ClassNotFoundException: org.apache.cassandra.hadoop.ColumnFamilySplit

I am trying to run Cassandra-0.8.5, Hadoop 0.2.0 and Pig 0.8.1. I run a very simple pig scripts as
rows = LOAD 'cassandra://pygmalion/$CF' USING CassandraStorage() AS (key, columns: bag {T: tuple(name, value)});
counted = foreach (group rows all) generate COUNT($1);
dump counted;
it worked well if i run local mode. But if I run mapreduce mode, i alway get error message as below, i run out of idea. any help or hind will be greatly appreciated.
pig_813399.log:
Backend error message
java.io.IOException: java.lang.ClassNotFoundException: org.apache.cassandra.hadoop.ColumnFamilySplit
at org.apache.pig.backend.hadoop.executionengine.mapReduceLayer.PigSplit.readFields(PigSplit.java:225)
at org.apache.hadoop.io.serializer.WritableSerialization$WritableDeserializer.deserialize(WritableSerialization.java:67)
at org.apache.hadoop.io.serializer.WritableSerialization$WritableDeserializer.deserialize(WritableSerialization.java:40)
at org.apache.hadoop.mapred.MapTask.getSplitDetails(MapTask.java:349)
at org.apache.hadoop.mapred.MapTask.runNewMapper(MapTask.java:611)
at org.apache.hadoop.mapred.MapTask.run(MapTask.java:323)
at org.apache.hadoop.mapred.Child$4.run(Child.java:270)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:416)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1127)
at org.apache.hadoop.mapred.Child.main(Child.java:264) Caused by: java.lang.ClassNotFoundException: org.apache.c
Pig Stack Trace
ERROR 2997: Unable to recreate exception from backed error: java.io.IOException: java.lang.ClassNotFoundException: org.apache.cassandra.hadoop.ColumnFamilySplit
org.apache.pig.impl.logicalLayer.FrontendException: ERROR 1066: Unable to open iterator for alias counted. Backend error : Unable to recreate exception from backed error: java.io.IOException: java.lang.ClassNotFoundException: org.apache.cassandra.hadoop.ColumnFamilySplit
at org.apache.pig.PigServer.openIterator(PigServer.java:753)
at org.apache.pig.tools.grunt.GruntParser.processDump(GruntParser.java:615)
at org.apache.pig.tools.pigscript.parser.PigScriptParser.parse(PigScriptParser.java:303)
at org.apache.pig.tools.grunt.GruntParser.loadScript(GruntParser.java:477)
at org.apache.pig.tools.grunt.GruntParser.processScript(GruntParser.java:422)
at org.apache.pig.tools.pigscript.parser.PigScriptParser.Script(PigScriptParser.java:692)
at org.apache.pig.tools.pigscript.parser.PigScriptParser.parse(PigScriptParser.java:425)
at org.apache.pig.tools.grunt.GruntParser.parseStopOnError(GruntParser.java:168)
at org.apache.pig.tools.grunt.GruntParser.parseStopOnError(GruntParser.java:144)
at org.apache.pig.tools.grunt.Grunt.run(Grunt.java:76)
at org.apache.pig.Main.run(Main.java:455)
at org.apache.pig.Main.main(Main.java:107)
Caused by: org.apache.pig.backend.executionengine.ExecException: ERROR 2997: Unable to recreate exception from backed error: java.io.IOExcepti
on: java.lang.ClassNotFoundException: org.apache.cassandra.hadoop.ColumnFamilySplit
at org.apache.pig.backend.hadoop.executionengine.mapReduceLayer.Launcher.getErrorMessages(Launcher.java:221)
at org.apache.pig.backend.hadoop.executionengine.mapReduceLayer.Launcher.getStats(Launcher.java:151)
at org.apache.pig.backend.hadoop.executionengine.mapReduceLayer.MapReduceLauncher.launchPig(MapReduceLauncher.java:337)
at org.apache.pig.backend.hadoop.executionengine.HExecutionEngine.execute(HExecutionEngine.java:382)
at org.apache.pig.PigServer.executeCompiledLogicalPlan(PigServer.java:1209)
at org.apache.pig.PigServer.storeEx(PigServer.java:885)
at org.apache.pig.PigServer.store(PigServer.java:827)
at org.apache.pig.PigServer.openIterator(PigServer.java:739)
It sounds like you need to update the HADOOP_CLASSPATH environment variable to include the cassandra jars. You will need to restart the hadoop processes after you do.
export HADOOP_CLASSPATH=/path/to/cassandra/lib/*:$HADOOP_CLASSPATH
See http://wiki.apache.org/cassandra/HadoopSupport for other possible problems with running hadoop/pig against cassandra.

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