I'm trying to compile a program and during the configure checks one library cannot be found. Linking in my .bashrc file to this library with:
LD_LIBRARY_PATH=/usr/lib/:/users/much/needed/library/:$LD_LIBRARY_PATH:/path/to/other/libs/
export LD_LIBRARY_PATH
after that I source the .bashrc file with
source ~/.bashrc
and check with echo $LD_LIBRARY_PATH to see if the LD_LIBRARY_PATH contains the path to the library I need (and it's there).
However, when I run ./configure again - the same error appears. Do you have any hints as to what might be wrong here? I can't find any problem...
Could you try exporting LDFLAGS="-L/usr/lib/:/users/much/needed/library/" in addition to the LD_LIBRARY_PATH you mentioned?
LD_LIBRARY_PATH tells the loader where to find libraries when executing a binary at runtime, but the linker needs to find the required library at link time too.
Sounds like you need to run ldconfig to create the linker bindings. Add the directory to /etc/ld.so.conf and then run ldconfig (as root).
Related
So I got several shared libraries that I am trying to permanently install on my Ubuntu system but I am having some difficulty with it.
I want to install the libraries and the headers in a separate folder under /usr/local/lib and /usr/local/include (for example a folder named agony) so it would be clean and removing them would just require that I delete those folders. so it looks something like this:
/usr/local/lib/agony/libbtiGPIO.so
/usr/local/lib/agony/libbtiDSP.so
...
/usr/local/include/agony/GPIO.h
/usr/local/include/agony/DSP.h
...
And I added a file here /etc/ld.so.conf.d/agony.conf which include a line describing the path to the library folder:
$ cat /etc/ld.so.conf.d/agony.conf
/usr/local/lib/agony
and I perform sudo ldconfig to update the library database.
So to double check if the library is found I do ldconfig -p | grep bti* and
I see the following result:
$ ldconfig -p | grep bti
...
libbtiGPIO.so (libc6,x86-64) => /usr/local/lib/agony/libbtiGPIO.so
libbtiDSP.so (libc6,x86-64) => /usr/local/lib/agony/libbtiDSP.so
...
At this point I should be able to use the libraries without specifying the library path. But When I attempt to compile an application without providing the library path (-L) it fails. However, when I supply gcc with the library path ex:
gcc source.c -L /usr/local/lib/agony output -lbtiGPIO -lbtiDSP
it works!!
I don't want to use LD_LIBRARY_PATH environment variable because this library is going to be used everywhere on the system and I don't want other compilers to worry about providing LD_LIBRARY_PATH.
What am I doing wrong here?
At this point I should be able to use the libraries without specifying the library path
Here lies the confusion.
You have built your shared library libbtiGPIO.so (just sticking with that one),
placed it in /usr/local/lib/agony, and updated the ldconfig database accordingly.
The effect of that is when you run a program that has been linked with libbtiGPIO
then the dynamic linker (/lib/x86_64-linux-gnu/ld-2.21.so, or similar) will know where to look
to load that library into the process and you will not need to tell it by setting an LD_LIBRARY_PATH in the environment.
However, you haven't done anything that affects the list of default library
search directories that are hardwired into your build of gcc, that it passes to
the linker (/usr/bin/ld) when you link a program with libbtiGPIO in the first place.
That list of default search directories is what you will find if your do a verbose
build of your program - gcc -v ... - and then pick out the value of LIBRARY_PATH
from the output, e.g.
LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/5/:\
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/:\
/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib/:\
/lib/x86_64-linux-gnu/:\
/lib/../lib/:\
/usr/lib/x86_64-linux-gnu/:\
/usr/lib/../lib/:\
/usr/lib/gcc/x86_64-linux-gnu/5/../../../:\
/lib/:\
/usr/lib
/usr/local/lib/agony is not one of those and to make it one of those you
would have to build gcc from source yourself. Hence, in order to link your
program with libbtiGPIO you still need to tell ld where to find it with
-L/usr/local/lib/agony -lbtiGPIO.
man, you misunderstand the procedure of complier and link.
First, libbtiGPIO.so is a shared link library not a static link library. it is important to know those difference .
Then you need to know something else. changing ld.so.conf.d/*.conf and run sudo ldconfig, it affects the procedure of link. in other words, if you don't add agony.conf and sudo ldconfig, you will receive a error when you run ./a.out rather than gcc source.c -L ...., the gcc command can run successfully even thougth you don't ldconfig.
Finally,if you don't pollute the LD_LIBRARY_PATH environment variable, you have to add -L ... options in your gcc command. What'more, if you don't want to input too many words in your shell frequently, you can learn to use Makefile.
On my UNIX machine I observed that the binaries are looking for the dependent shared libraries in '/lib' directory by default even though the '/lib' directory is not configured in 'PATH' and 'LD_LIBRARY_PATH' variables.
I the below see that the library 'libssl.so.4' is found from the '/lib' directory.
bash-3.00$ ldd openssl
/lib/libcwait.so (0x00f86000)
libssl.so.4 => /lib/libssl.so.4 (0x00408000)
My 'PATH' and 'LD_LIBRARY_PATH' are below:
bash-3.00$ echo $LD_LIBRARY_PATH
:/opt/oracle/product/11.2.0/client32/lib:
bash-3.00$ echo $PATH
/opt/pure/releases/purify.hp.2003a.06.15.FixPack.0214/cache/opt/star-ncf-prod/ep_patch/usr/lib:/usr/ccs/bin:/usr/bin:/usr/ucb:/etc:/bin:.:/opt/ccm71/bin:/opt/oracle/product/11.2.0/client32/bin:/opt/tools/bin:/usr/local/bin
Please let mw know if the binaries refer to '/lib' directory by default ?
Read ld.so(8), ldd(1) and dlopen(3) man pages and Drepper's paper: How To Write Shared Libraries
You'll see that "If a library dependency does not contain a slash, then it is searched
for" at last in /lib then /usr/lib
These two directories are builtin, i.e. wired in the code of the dynamic linker, e.g. of /lib64/ld-linux-x86-64.so.2 on my Debian system (I guess -but I am not sure- that on my Debian /lib64/ is also wired in).
In order for an executable to find the required libraries to link with during run time, one must configure the system so that the libraries can be found. Methods available: (Do at least one of the following)
Add library directories to be included during dynamic linking to the file /etc/ld.so.conf
Sample: /etc/ld.so.conf
/usr/X11R6/lib
/usr/lib
...
/usr/lib/sane
/usr/lib/mysql
/opt/lib
Add the library path to this file and then execute the command (as root) ldconfig to configure the linker run-time bindings.
You can use the "-f file-name" flag to reference another configuration file if you are developing for different environments.
See man page for command ldconfig
OR
Add specified directory to library cache: (as root)
ldconfig -n /opt/lib
Where /opt/lib is the directory containing your library libctest.so
(When developing and just adding your current directory: ldconfig -n . Link with -L.)
This will NOT permanently configure the system to include this directory. The information will be lost upon system reboot.
OR
Specify the environment variable LD_LIBRARY_PATH to point to the directory paths containing the shared object library. This will specify to the run time loader that the library paths will be used during execution to resolve dependencies.
(Linux/Solaris: LD_LIBRARY_PATH, SGI: LD_LIBRARYN32_PATH, AIX: LIBPATH, Mac OS X: DYLD_LIBRARY_PATH, HP-UX: SHLIB_PATH)
Example (bash shell): export LD_LIBRARY_PATH=/opt/lib:$LD_LIBRARY_PATH or add to your ~/.bashrc file:
`...
if [ -d /opt/lib ];
then
LD_LIBRARY_PATH=/opt/lib:$LD_LIBRARY_PATH
fi
...
export LD_LIBRARY_PATH`
This instructs the run time loader to look in the path described by the environment variable LD_LIBRARY_PATH, to resolve shared libraries. This will include the path /opt/lib.
Library paths used should conform to the "Linux Standard Base" directory structure.
My project includes a library and example projects for how to use it. I place the library in the "bin" folder along with all executable examples. I can run the example projects on the machine where they were compiled but when I try to run them on another machine I get:
./example: error while loading shared libraries: libMyLib.so: cannot
open shared object file: No such file or directory
This makes no sense since the library is in the same folder. What is causes it to ignore the library on other machines?
Just because the library is in the same directory as the executable doesn't mean it will look there for it. By default on linux, executables will only look in a limited set of directories, set by ldconfig and the LD_LIBRARY_PATH environment variable.
One trick that is very useful is to link your program with the extra linker option
-Wl,-rpath,'$ORIGIN'
which will cause the executable to also look in the directory the executable is in for shared objects.
You can usually set this by adding to your Makefile:
LDFLAGS := -Wl,-rpath,'$$ORIGIN'
Note the double-$ here -- make will interpret this as a make variable which expands to just $
The current directory is not necessarily a place where the dynamic linker will look for dynamic libraries. The directory where the executable is much less.
You might want to check ldconfig to see where it looks for them.
The problem I faced has been solved here:
Loading shared library in open-mpi/ mpi-run
I know not how, setting LD_LIBRARY_PATH or specifying -x LD_LIBRARY_PATH fixes the problem, when my installation itself specifies the necessary -L arguments. My installation is in ~/mpi/
I have also included my compile-link configs.
$ mpic++ -showme:version
mpic++: Open MPI 1.6.3 (Language: C++)
$ mpic++ -showme
g++ -I/home/vigneshwaren/mpi/include -pthread -L/home/vigneshwaren/mpi/lib
-lmpi_cxx -lmpi -ldl -lm -Wl,--export-dynamic -lrt -lnsl -lutil -lm -ldl
$ mpic++ -showme:libdirs
/home/vigneshwaren/mpi/lib
$ mpic++ -showme:libs
mpi_cxx mpi dl m rt nsl util m dl % Notice mpi_cxx here %
When I compiled with mpic++ <file> and ran with mpirun a.out I got a (shared library) linker error
error while loading shared libraries: libmpi_cxx.so.1:
cannot open shared object file: No such file or directory
The error has been fixed by setting LD_LIBRARY_PATH. The question is how and why? What am i missing? Why is LD_LIBRARY_PATH required when my installation looks just fine.
libdl, libm, librt, libnsl and libutil are all essential system-wide libraries and they come as part of the very basic OS installation. libmpi and libmpi_cxx are part of the Open MPI installation and in your case are located in a non-standard location that must be explicitly included in the linker search path LD_LIBRARY_PATH.
It is possible to modify the configuration of the Open MPI compiler wrappers and make them pass the -rpath option to the linker. -rpath takes a library path and appends its to a list, stored inside the executable file, which tells the runtime link editor (a.k.a. the dynamic linker) where to search for libraries before it consults the LD_LIBRARY_PATH variable. For example, in your case the following option would suffice:
-Wl,-rpath,/home/vigneshwaren/mpi/lib
This would embed the path to the Open MPI libraries inside the executable and it would not matter if that path is part of LD_LIBRARY_PATH at run time or not.
To make the corresponding wrapper add that option to the list of compiler flags, you would have to modify the mpiXX-wrapper-data.txt file (where XX is cc, c++, CC, f90, etc.), located in mpi/share/openmpi/. For example, to make mpicc pass the option, you would have to modify /home/vigneshwaren/mpi/share/openmpi/mpicc-wrapper-data.txt and add the following to the line that starts with linker_flags=:
linker_flags= ... -Wl,-rpath,${prefix}/lib
${prefix} is automatically expanded by the wrapper to the current Open MPI installation path.
In my case, I just simply appends
export LD_LIBRARY_PATH=/PATH_TO_openmpi-version/lib:$LD_LIBRARY_PATH
For example
export LD_LIBRARY_PATH=/usr/local/openmpi-1.8.1/lib:$LD_LIBRARY_PATH
into $HOME/.bashrc file and then source it to active again source $HOME/.bashrc.
I installed mpich 3.2 using the following command on Ubuntu.
sudo apt-get install mpich
When I tried to run the mpi process using mpiexec, I got the same error.
/home/node1/examples/.libs/lt-cpi: error while loading shared libraries: libmpi.so.0: cannot open shared object file: No such file or directory
Configuring LD_LIBRARY_PATH didn't fix my problem.
I did a search for the file 'libmpi.so.0' on my machine but couldn't find it. Took me some time to figure out that 'libmpi.so.0' file is named as 'libmpi.so' on my machine. So I renamed it to 'libmpi.so.0'.
It solved my problem!
If you are having the same problem and you installed the library through apt-get, then do the following.
The file 'libmpi.so' should be in the location '/usr/lib/'. Rename the file to 'libmpi.so.0'
mv /usr/lib/libmpi.so /usr/lib/libmpi.so.0
After that MPI jobs should run without any problem.
If 'libmpi.so' is not found in '/usr/lib', you can get its location using the following command.
whereis libmpi.so
first, run this command
$ sudo apt-get install libcr-dev
if still have this problem then configure LD_LIBRARY_PATH like this:
export LD_LIBRARY_PATH=/usr/local/mpich-3.2.1/lib:$LD_LIBRARY_PATH
then add it to ~/.bashrc before this line:
[ -z "$PS1" ] && return
Simply running
$ ldconfig
appears to me as a better way to solve the problem (taken from a comment on this question). In particular, since it avoids misuse of the LD_LIBRARY_PATH environment variable. See here and here, for why I believe it's misused to solve the problem at hand.
I have a certain shared object library in a special directory which I
make sure special directory is in $LD_LIBRARY_PATH
make sure this directory has read and execute permisions for all
make sure appropriate library directory is in ld.so.conf and that root has done a ldconfig
(verify by checking for library using ldconfig -p as normaluser.
make sure it is has no soname problems (i.e. create a few symlinks if necessary)
Now, say I compile a program that needs that special library, a program packaged in a typical Open Source manner which ./configure && make, etc) and it says -lspecialibrary cannot be found, an error which a lack of any of the above checks would also probably throw.
A workaround I have done is to symlink the library to /usr/local/lib64 and suddenly the library has ben found. Also when compiling a relatively simple package, I manually add -L/path/to/spec/lib and that also has worked. But I regard those two methods as hacks, so I was looking for any clues as to why my list of checks aren't good enough to find a library.
(I particularly find the $LD_LIBRARY_PATH of shallow use. In fact I can exclude certain libraries from it, and they will still be found in a compilation process).
$LD_LIBRARY_PATH and ldconfig are only used to locate libraries when running programs that need libraries, i.e. they are used by the loader not the compiler. Your program depends on libspeciallibrary.so. When running your program $LD_LIBRARY_PATH and ldconfig are consulted to find libspeciallibary.so.
These methods are not used by your compiler to find libraries. For your compiler, the -L option is the right way to go. Since your package uses the autotools, you should set the $LDFLAGS environment variable:
LDFLAGS=-L/path/to/lib ./configure && make
This is also documented in the configure help:
./configure --help