So I am not experienced in dealing with a plethora of file types, and I haven't been able to find much info on exactly what .sh files are. Here's what I'm trying to do:
I'm trying to download map data sets which are arranged in tiles that can be downloaded individually: http://daymet.ornl.gov/gridded
In order to download a range of tiles at once, they say to download their script, which eventually leads to daymet-nc-retrieval.sh: https://github.com/daymet/scripts/blob/master/Bash/daymet-nc-retrieval.sh
So, what exactly am I supposed to do with this code? The website doesn't provide further instructions, assuming users know what to do with it. I'm guessing you're supposed to paste the code in to some other unmentioned application for a browser (using Chrome or Firefox in this case)? It almost looks like something that could be pasted in to Firefox/Greasemonkey, but not quite. Just by a quick Google on the file type I haven't been able to get heads or tails on it.
I'm sure there's a simple explanation on what to do with these files out there, but it seems to be buried in plenty of posts where people are already assuming you know what to do with these files. Anyone willing to just simply say what needs to be done from square one after getting to the page with the code to actually implementing it? Thanks.
What is a file with extension .sh?
It is a Bourne shell script. They are used in many variations of UNIX-like operating systems. They have no "language" and are interpreted by your shell (interpreter of terminal commands) or if the first line is in the form
#!/path/to/interpreter
they will use that particular interpreter. Your file has the first line:
#!/bin/bash
and that means that it uses Bourne Again Shell, so called bash. It is for all practical purposes a replacement for good old sh.
Depending upon the interpreter you will have different languages in which the file is written.
Keep in mind, that in UNIX world, it is not the extension of the file that determines what the file is (see "How to execute a shell script" below).
If you come from the world of DOS/Windows, you will be familiar with files that have .bat or .cmd extensions (batch files). They are not similar in content, but are akin in design.
How to execute a shell script
Unlike some unsafe operating systems, *nix does not rely exclusively on extensions to determine what to do with a file. Permissions are also used. This means that if you attempt to run the shell script after downloading it, it will be the same as trying to "run" any text file. The ".sh" extension is there only for your convenience to recognize that file.
You will need to make the file executable. Let's assume that you have downloaded your file as file.sh, you can then run in your terminal:
chmod +x file.sh
chmod is a command for changing file's permissions, +x sets execute permissions (in this case for everybody) and finally you have your file name.
You can also do it in your GUI. Most of the time you can right click on the file and select properties; in XUbuntu the permissions options look like this:
If you do not wish to change the permissions, you can also force the shell to run the command. In the terminal you can run:
bash file.sh
The shell should be the same as in the first line of your script.
How safe is it?
You may find it weird that you must perform another task manually in order to execute a file. But this is partially because of a strong need for security.
Basically when you download and run a bash script, it is the same thing as somebody telling you "run all these commands in sequence on your computer, I promise that the results will be good and safe". Ask yourself if you trust the party that has supplied this file, ask yourself if you are sure that you have downloaded the file from the same place as you thought, maybe even have a glance inside to see if something looks out of place (although that requires that you know something about *nix commands and bash programming).
Unfortunately apart from the warning above I cannot give a step-by-step description of what you should do to prevent evil things from happening with your computer; so just keep in mind that any time you get and run an executable file from someone you're actually saying, "Sure, you can use my computer to do something".
If you open your second link in a browser you'll see the source code:
#!/bin/bash
# Script to download individual .nc files from the ORNL
# Daymet server at: http://daymet.ornl.gov
[...]
# For ranges use {start..end}
# for individul vaules, use: 1 2 3 4
for year in {2002..2003}
do
for tile in {1159..1160}
do wget --limit-rate=3m http://daymet.ornl.gov/thredds/fileServer/allcf/${year}/${tile}_${year}/vp.nc -O ${tile}_${year}_vp.nc
# An example using curl instead of wget
#do curl --limit-rate 3M -o ${tile}_${year}_vp.nc http://daymet.ornl.gov/thredds/fileServer/allcf/${year}/${tile}_${year}/vp.nc
done
done
So it's a bash script. Got Linux?
In any case, the script is nothing but a series of HTTP retrievals. Both wget and curl are available for most operating systems and almost all language have HTTP libraries so it's fairly trivial to rewrite in any other technology. There're also some Windows ports of bash itself (git includes one). Last but not least, Windows 10 now has native support for Linux binaries.
sh files are unix (linux) shell executables files, they are the equivalent (but much more powerful) of bat files on windows.
So you need to run it from a linux console, just typing its name the same you do with bat files on windows.
Typically a .sh file is a shell script which you can execute in a terminal. Specifically, the script you mentioned is a bash script, which you can see if you open the file and look in the first line of the file, which is called the shebang or magic line.
I know this is an old question and I probably won't help, but many Linux distributions(e.g., ubuntu) have a "Live cd/usb" function, so if you really need to run this script, you could try booting your computer into Linux. Just burn a .iso to a flash drive (here's how http://goo.gl/U1wLYA), start your computer with the drive plugged in, and press the F key for boot menu. If you choose "...USB...", you will boot into the OS you just put on the drive.
How do I run .sh scripts?
Give execute permission to your script:
chmod +x /path/to/yourscript.sh
And to run your script:
/path/to/yourscript.sh
Since . refers to the current directory: if yourscript.sh is in the current directory, you can simplify this to:
./yourscript.sh
or with GUI
https://askubuntu.com/questions/38661/how-do-i-run-sh-scripts/38666#38666
https://www.cyberciti.biz/faq/run-execute-sh-shell-script/
open the location in terminal then type these commands
1. chmod +x filename.sh
2. ./filename.sh
that's it
Related
I am trying to code on Colab and if I take a look at the code its self similar with linux, therefore I am asking how the commands work on linux.
I am still confused the why cd on linux works. If I have code like this
cd A/B
it means to create new directory right?
after the first code then I write this
!wget https://abcd.com
does it mean I download file from https://abcd.com and store it at B path?
cd does not create anything, it just changes your shell's current working directory.
The ! in your next command is a bit weird, too. It indicates a history expansion of the most recent command line in your shell history starting with wget, adding https://abcd.com to that command line and then running it. That could be pretty much anything, depending on what your shell history contains.
I am wondering when and why do we need execution permission in linux although we can run any script without execute permission when we execute that script using the syntax bellow?
bash SomeScriptFile
Not all programs are scripts — bash for example isn't. So you need execute permission for executable programs.
Also, when you say bash SomeScriptFile, the script has to be in the current directory. If you have the script executable and in a directory on your PATH (e.g. $HOME/bin), then you can run the script without the unnecessary circumlocution of bash $HOME/bin/SomeScriptFile (or bash ~/bin/SomeScriptFile); you can simply run SomeScriptFile. This economy is worth having.
Execute permission on a directory is somewhat different, of course, but also important. It permits the 'class of user' (owner, group, others) to access files in the directory, subject to per-file permissions also allowing that.
Executing the script by invoking it directly and running the script through bash are two very different things.
When you run bash ~/bin/SomeScriptFile you are really just executing bash -- a command interpreter. bash in turns load the scripts and runs it.
When you run ~/bin/SomeSCriptFile directly, the system is able to tell this file is a script file and finds the interpreter to run it. There is a big of magic invoking the #! on the first line to look for the right interpreter.
The reason we run scripts directly is that the user (and system) couldn't know or care of the command we are running is a script or a compiled executable.
For instance, if I write a nifty shell script called fixAllIlls and later I decide to re-write it in C, as long a I keep the same interface, the users don't have to do anything different.
To them, it is just a program to run.
edit
The operating system checks permissions first for several reasons:
Checking permissions is faster
In the days of old, you could have SUID scripts, so one needed to check the permission bits.
As a result, it was possible to run scripts that you could not actually read the contents of. (That is still true of binaries.)
I have a Windows dedicated server and I installed Multicraft to run Minecraft servers, and I wanted to add a accept EULA button, since I did not know much about bat files, so I found a sh file online and I did not want to use Cygwin because I don't know how to install it and make it run properly.
I want to change this to a .bat file:
#!/bin/sh echo 'eula=true' > "$SERVER_DIR/eula.txt"
it basically finds the line eula=false in eula.txt and changes it to true from what i understand
I would guess that this is what you're looking for:
echo eula=true>>%SERVER_DIR%\eula.txt
Given the double greater-than symbol it should append the line to the indicated file. Note that we're using a backslash here. You might want to look at the contents of that SERVER_DIR environment variable to see if it will work on a Windows-based computer.
If you want to mirror the behavior in the UNIX script then use a single greater-than symbol to overwrite the file content.
I have written a simple Shell script named decBright.sh that decreases my screen brightness by a bit every time I run it. However, I do not want to open the terminal and execute bash decBright.sh every single time.
Instead, I want to create some kind of executable file that I can place on my Desktop, which will run my script when it is double-clicked. One answer I found here on the askUbuntu forums did not work for me.
Is there some other way to do it?
I am using Ubuntu 14.04 (Trusty Tahr)
An executable in linux is a file with the executable bit on. Thus you simply modify it with chmod:
chmod +x decBright.sh
Then you can run it with:
./decbright.sh
You can also run it by double-clicking in many graphical linux distributions.
You also better provide a "Shebang": the first line of your script should specify the "interpreter":
#!/bin/bash
Or any other interpreter (at the first line of your file).
I am trying to create a script that will run a program on each file in a list. I have been trying to do this using a .csh file (I have no clue if this is the best way), and I started with something as simple as hello world
echo "hello world"
The problem is that I cannot execute this script, or verify that it works correctly. (I was trying to do ./testscript.csh which is obviously wrong). I haven't been able to find anything that really explains how to run C Scripts, and I'm guessing there's a better way to do this too. What do I need to change to get this to work?
You need to mark it as executable; Unix doesn't execute things arbitrarily based on extension.
chmod +x testscript.csh
Also, I strongly recommend using sh or bash instead of csh, or you will soon learn about the idiosyncrasies of csh's looping and control flow constructs (some things only work inside them if done a particular way, in particular with the single-line versions things are very limited).
You can use ./testscript.csh. You will however need to make it executable first:
chmod u+x testscript.csh
Which means set testscript to have execute permissions for the user (who ever the file is owned by - which in this case should be yourself!)
Also to tell the OS that this is a csh script you will need put
#! /path/to/csh
on the first line (where /path/to/csh is the full path to csh on your system. You can find that out by issuing the command which csh).
That should give you the behvaiour you want.
EDIT As discussed in some of the comments, you may want to choose an alternative shell to C Shell (csh). It is not the friendliest one for scripting.
You have several options.
You can run the script from within your current shell. If you're running csh or tcsh, the syntax is source testscript.csh. If you're running sh, bash, ksh, etc., the syntax is . ./testscript.sh. Note that I've changed the file name suffix; source or . runs the commands in the named file in your current shell. If you have any shell-specific syntax, this won't work unless your interactive shell matches the one used by the script. If the script is very simple (just a sequence of simple commands), that might not matter.
You can make the script an executable program. (I'm going to repeat some of what others have already written.) Add a "shebang" as the first line. For a csh script, use #!/bin/csh -f. The -f avoids running commands in your own personal startup scripts (.cshrc et al), which saves time and makes it more likely that others will be able to use it. Or, for a sh script (recommended), used #!/bin/sh (no -f, it has a completely different meaning). In either case, run chmod +x the_script, then ./the_script.
There's a trick I often use when I want to perform some moderately complex action. Say I want to delete some, but not all, files in the current directory, but the criterion can't be expressed conveniently in a single command. I might run ls > tmp.sh, then edit tmp.h with my favorite editor (mine happens to be vim). Then I go through the list of files and delete all the ones that I want to leave alone. Once I've done that, I can replace each file name with a command to remove it; in vim, :%s/.*/rm -f &/. I add a #!/bin/sh at the top save it, chmod +x foo.sh, then ./foo.sh. (If some of the file names might have special characters, I can use :%s/.*/rm -f '&'/.)