I've been tasked with writing a script to clean up old core files on production Linux servers. While the script is not difficult to write, I'd like to save a basic stack backtrace to a log file before removing the core files.
Being that these servers are production, and we do not have GDB or any development tools installed, I'm looking for some quick and dirty program that will give the analog of a gdb backtrace command for a multithreaded application.
Does anyone know of such a tool?
Thanks in advance.
There are a few things like this. Mostly they are incomplete relative to gdb -- for example it is uncommon for backtracers to print information about function arguments or locals, but gdb can do this. Also gdb can often unwind in cases where other unwinders choke.
Anyway, one I know of is elfutils. https://fedorahosted.org/elfutils/. It has an unwinder in development (not sure if it is in or yet, check git).
There's also libbacktrace. It is part of gcc and is designed for in-process unwinding. However, it could perhaps be adapted to core files.
There's also libunwind. I hear it is kind of terrible but YMMV.
One thing to note is that many of these require debuginfo to be available.
One last thought -- there has been a lot of work in the "catch a trace" area from the ABRT folks. ABRT uses a kernel hook to catch a core dump while it is being made. Then it does analysis by uploading the core to a server, files bugs, etc. You could maybe reuse a lot of their work. There's some other work in this space as well.
Kind of a brain dump, I hope it helps.
I need to write a script to check the disk every minute and report if it is failing by any reason. The error could be the absolute disk failure and a bad sector and so on .
First, I wonder if there is any script out there that does the same as it should be a standard procedure (because I really do not want to reinvent the wheel).
Second, I wonder if I want to look for errors in /var/log/messages, is there any list of standard error strings for disks that I can use?
I look for that on the net a lot, there are lots of info and at the same time no info about that.
Any help will be much appreciated.
Thanks,
You could simply parse the output of dmesg which usually reports fairly detailed information about drive errors, well that's how I've collected stats on failing drives before.
You might get better more well documented information by using Parse::Syslog or lower level kernel reporting directly though.
Logwatch does the /var/log/messages part of the ordeal (as well as any other logfiles that you choose to add). You can either choose to use that, or to use its code to roll your own sollution (it's all written in perl).
If your harddrives support SMART, i suggest you use smartctl output for diagnostics as it includes a lot of nice info that can be monitored over time to detect failure.
I'm currently developing an application which needs a lot of system and process information, some of which is only available through /proc, and I have some general questions about accessing the structures.
The application will be run on Linux (kernel >= 2.6), not on any other Unix-flavored OS. It should have access to any data in /proc, I can't say what is necessary now as the specifications are not clear yet, but the whole /proc directory is relevant to the application.
First of all: Is there a good documentation which covers all the features added / removed from kernel version to kernel version? One thing I'm curious about in particular is the format of the individual files. Can I take that for granted? Does it change among kernel versions?
Hooking up the parsing process based on the kernel wouldn't be a problem at all, it's just that I couldn't find any good docs on what has changed from version to version which could help me catching parsing errors in beforehand.
In addition: Is there a definite list of features that can be activated / deactivated by kernel options (except of course the /proc-feature itself)? I'm looking for a list of files / directories that only exist with the appropriate options being set in the kernel.
As an example of what I'm thinking of, this is a link to the proc manpage (http://linux.die.net/man/5/proc) which includes a lot of good information, e.g. some options include the earliest kernel version they were available at, some include whether a module is necessary to be loaded. This does not describe the output format of all information though, which is something I need if I want to parse it (e.g. if it is consistent throughout all kernel versions or changed at some point).
The second thing I'm wondering about is what happens if the process queried dies while being queried. What is my time interval? For example if I'm going to fetch a list of processes reading all the structures, and parse them one after another, what happens if my process x dies before I get to read it? Even if I check if the directory exists, it could still be gone one application call later.
Last but not least: Is there any major distribution out there that is not mounting proc?
From what I understand, a lot of common tools are based on the /proc interface such as lsmod or free, so I'm guessing that I can expect /proc to exist almost always.
The /proc interfaces are pretty stable (unlike the /sys interfaces), even if nothing is guaranteed. Almost all changes are backwards compatible, at least if they've been around for a few versions. You should
stick to the documented interfaces to be safe. If a file exists, its format may be extended in later versions, but normally in a backwards compatible way, e.g. adding columns to a table. The parts that are most at risk of disappearing are parts concerning hardware susbystems such as ACPI or SCSI, which are migrating to /sys (with a long transition period when both exist).
Most of the information is architecture-independent, except for hardware information (e.g. /proc/cpuinfo has very different fields on different architectures).
The main documentation is Documentation/filesystems/proc.txt in the kernel source. Consider proc(5) to be the overview and proc.txt to be the fine details. The kernel documentation is often incomplete, so don't be surprised if you need to resort to reading the source sometimes.
Most optional parts of /proc are activated by default if the driver whose data it exposes is included in the kernel. The exceptions are mostly related to hardware features that rarely need to be accessed from outside the kernel; if you need to access these features, you're probably already expecting to need to dig deeper. Look through Kconfig files in the kernel source for detailed information.
Process data (or hardware data related to removable hardware or provided by unloadable modules) can disappear under your nose. Most files under /proc can be read atomically, with a single read call with a reasonably-sized buffer; if you perform multiple read calls in sequence, drivers are supposed to guarantee that you get well-formed data. There is no way to guarantee atomicity between reads of separate files; if you're reading information about a process, this process can die at any time, and in principle could even be replaced by another process with the same PID before you're finished.
As it says in the description of /proc, “everyone should say Y here”. All desktop/server Linux systems and most embedded Linux systems must have /proc; a lot of things, including ps and other process management commands, many filesystem and device-related tools, and module loading, require it. The only systems that might be able to dispense with /proc are very small single-purpose embedded systems that support a single hardware configuration and run a fixed set of programs. You can count on its being here.
I have an application running on Linux, and I find myself wanting windows (!).
The problem is that every 1000 times or so I run into concurrency problems that are consistent with concurrent reading/writing of files. I am fairly sure that this behavior would be prohibited by file locking under Windows, but I don't have any sufficiently fast windows box to check.
There is simply too much file access (too much data) to expect strace to work reliably - the sheer volume of output is likely to change the problem too. It also happens on different files every time. Ideally I would like to change/reconfigure the linux file system to be more restrictive (as in fail-fast) wrt concurrent access.
Are there any tools/settings I can use to achieve this ?
Hmmm. Concurrent access to files is perfectly legitimate on Posix-like systems so there is no kind of "failure" mode associated with it. Is there a reason you can't use file-locking on Linux? It's difficult to tell from your description what the actual problem is (1000 times of what?) but it sounds like the traditional flock() or lockf() system calls might be what you're looking for.
For some reason I thought you were using C++. The following applies if you are.
If you are using multi-threading and fstream IO and custom streambufs or you disabled sync_with_stdio, then yes, the C++ iostreams will act differently from iostreams on Windows.
I ran into this with one of my own projects.
Windows defines a mutex in its iostream sentry. Linux does not. Linux does seem to have locking in its C stdio functions, so usually that works out anyway.
However, I defined a custom debug streambuf that didn't go through stdio and got all sorts of corruption in Linux.
I got around it by using a mutex that is preprocessed out if the OS is Windows.
Is it possible to 'hibernate' a process in linux?
Just like 'hibernate' in laptop, I would to write all the memory used by a process to disk, free up the RAM. And then later on, I can 'resume the process', i.e, reading all the data from memory and put it back to RAM and I can continue with my process?
I used to maintain CryoPID, which is a program that does exactly what you are talking about. It writes the contents of a program's address space, VDSO, file descriptor references and states to a file that can later be reconstructed. CryoPID started when there were no usable hooks in Linux itself and worked entirely from userspace (actually, it still does work, depending on your distro / kernel / security settings).
Problems were (indeed) sockets, pending RT signals, numerous X11 issues, the glibc caching getpid() implementation amongst many others. Randomization (especially VDSO) turned out to be insurmountable for the few of us working on it after Bernard walked away from it. However, it was fun and became the topic of several masters thesis.
If you are just contemplating a program that can save its running state and re-start directly into that state, its far .. far .. easier to just save that information from within the program itself, perhaps when servicing a signal.
I'd like to put a status update here, as of 2014.
The accepted answer suggests CryoPID as a tool to perform Checkpoint/Restore, but I found the project to be unmantained and impossible to compile with recent kernels.
Now, I found two actively mantained projects providing the application checkpointing feature.
The first, the one I suggest 'cause I have better luck running it, is CRIU
that performs checkpoint/restore mainly in userspace, and requires the kernel option CONFIG_CHECKPOINT_RESTORE enabled to work.
Checkpoint/Restore In Userspace, or CRIU (pronounced kree-oo, IPA: /krɪʊ/, Russian: криу), is a software tool for Linux operating system. Using this tool, you can freeze a running application (or part of it) and checkpoint it to a hard drive as a collection of files. You can then use the files to restore and run the application from the point it was frozen at. The distinctive feature of the CRIU project is that it is mainly implemented in user space.
The latter is DMTCP; quoting from their main page:
DMTCP (Distributed MultiThreaded Checkpointing) is a tool to transparently checkpoint the state of multiple simultaneous applications, including multi-threaded and distributed applications. It operates directly on the user binary executable, without any Linux kernel modules or other kernel modifications.
There is also a nice Wikipedia page on the argument: Application_checkpointing
The answers mentioning ctrl-z are really talking about stopping the process with a signal, in this case SIGTSTP. You can issue a stop signal with kill:
kill -STOP <pid>
That will suspend execution of the process. It won't immediately free the memory used by it, but as memory is required for other processes the memory used by the stopped process will be gradually swapped out.
When you want to wake it up again, use
kill -CONT <pid>
The more complicated solutions, like CryoPID, are really only needed if you want the stopped process to be able to survive a system shutdown/restart - it doesn't sound like you need that.
Linux Kernel has now partially implemented the checkpoint/restart futures:https://ckpt.wiki.kernel.org/, the status is here.
Some useful information are in the lwn(linux weekly net):
http://lwn.net/Articles/375855/ http://lwn.net/Articles/412749/ ......
So the answer is "YES"
The issue is restoring the streams - files and sockets - that the program has open.
When your whole OS hibernates, the local files and such can obviously be restored. Network connections don't, but then the code that accesses the internet is typically more error checking and such and survives the error conditions (or ought to).
If you did per-program hibernation (without application support), how would you handle open files? What if another process accesses those files in the interim? etc?
Maintaining state when the program is not loaded is going to be difficult.
Simply suspending the threads and letting it get swapped to disk would have much the same effect?
Or run the program in a virtual machine and let the VM handle suspension.
Short answer is "yes, but not always reliably". Check out CryoPID:
http://cryopid.berlios.de/
Open files will indeed be the most common problem. CryoPID states explicitly:
Open files and offsets are restored.
Temporary files that have been
unlinked and are not accessible on the
filesystem are always saved in the
image. Other files that do not exist
on resume are not yet restored.
Support for saving file contents for
such situations is planned.
The same issues will also affect TCP connections, though CryoPID supports tcpcp for connection resuming.
I extended Cryopid producing a package called Cryopid2 available from SourceForge. This can
migrate a process as well as hibernating it (along with any open files and sockets - data
in sockets/pipes is sucked into the process on hibernation and spat back into these when
process is restarted).
The reason I have not been active with this project is I am not a kernel developer - both
this (and/or the original cryopid) need to get someone on board who can get them running
with the lastest kernels (e.g. Linux 3.x).
The Cryopid method does work - and is probably the best solution to general purpose process
hibernation/migration in Linux I have come across.
The short answer is "yes." You might start by looking at this for some ideas: ELF executable reconstruction from a core image (http://vx.netlux.org/lib/vsc03.html)
As others have noted, it's difficult for the OS to provide this functionality, because the application needs to have some error checking builtin to handle broken streams.
However, on a side note, some programming languages and tools that use virtual machines explicitly support this functionality, such as the Self programming language.
This is sort of the ultimate goal of clustered operating system. Mathew Dillon puts a lot of effort to implement something like this in his Dragonfly BSD project.
adding another workaround: you can use virtualbox. run your applications in a regular virtual machine and simply "save the machine state" whenever you want.
I know this is not an answer, but I thought it could be useful when there are no real options.
if for any reason you don't like virtualbox, vmware and Qemu are as good.
Ctrl-Z increases the chances the process's pages will be swapped, but it doesn't free the process's resources completely. The problem with freeing a process's resources completely is that things like file handles, sockets are kernel resources the process gets to use, but doesn't know how to persist on its own. So Ctrl-Z is as good as it gets.
There was some research on checkpoint/restore for Linux back in 2.2 and 2.4 days, but it never made it past prototype. It is possible (with the caveats described in the other answers) for certain values of possible - I you can write a kernel module to do it, it is possible. But for the common value of possible (can I do it from the shell on a commercial Linux distribution), it is not yet possible.
There's ctrl+z in linux, but i'm not sure it offers the features you specified. I suspect you asked this question since it doesn't