Trying to install Cytoscape program on linux cytoscape. And I don't know how because first install button transfers me to HTML page and nothing is downloadable. (I have java installed). I tried to download tar.gz file but I am stuck, because there is no configure file and it says I have no permission for it. What should I do?
Once java 11 is installed on your computer try this:
ctrl+alt+T #open Ubuntu's console
cd /home/fulanita/Downloads #this is the directory where my computer has cytoscape.
chmod +x ./Cytoscape_3_8_1_unix.sh
./Cytoscape_3_8_1_unix.sh #3.8.1 is the last version for Ubuntu
the program will start to install
If anyone comes here in search for an answer I found a solution.
You go to you directory where you keep extracted tar.gz
with cd -Folderdestination/ you locate a folderwhere you keep a file named cytoscape.sh, and with command
sudo sh cytoscape.sh
install the program.
Related
Good afternoon good people
On my Ubuntu 20.04 I created a .py file and tried to package using pyinstaller.
a = "It worked"
print (a)
He created it but when I went to the distance and ran the operating system he returned the following message:
There is no application installed for" shared library "files. Do you want to search for an application to open this file?
I believe that my operating system must be missing some lib.
What can I do?
try running it in terminal
chmod +x filename
./filename
or if it's an executable:
/path/to/file
I am a complete newbie to Linux and trying to open an AppImage called Magick which is an Imagemagick application.
I tried right clicking on the AppImage and checked "run file as an executable" option but that didn't work. Another thing that I tried is running this command,
chmod a+x magick.AppImage
This gives me an error,
chmod: cannot access 'magick.AppImage': No such file or directory
I have also tried running the file by navigating into the folder that contains the file and opening up the terminal there but still no luck.
I am running Ubuntu on Oracle VM VirtualBox.
ImageMagick is a command-line tool, you don't run it by clicking on it.
To run it in a terminal you need to
Set the executable flag on the .AppImage (once for all): chmod +x TheApp.AppImage
Then to run it just invoke the AppImage: ./TheApp.AppImage <arg1> <arg2> ....
If the directory with your .AppImage is in your PATH, you can remove the ./ (or whatever directory the AppImage is in).
ImageMagick is also available as a regular application from your Ubuntu repository: sudo apt install imagemagick
I'm new to Linux and i use Kali Linux. I downloaded the eclipse ide. Every time, when i need to run it, i should navigate to eclipse folder and run the eclipse file. there are other softwares like pycharm have the same issue.
If there's any method to run these programs just typing "eclipse" or "pycharm" on terminal (like firefox, atom) it's very helpful. If anyone know how to do it please let me know. I already searched a solution for this problem and i couldn't find any solution.
-Thanks (sorry for my English)
Modify your ~/.bashrc and add the PATH of your application(you use PATH rather then CONFIG_PATH)
export PATH=$PATH:/path/to_directory_containing_program
export CONFIG_PATH=/my_path_to_PROGRAM/PROGRAM/config/
Another solution is Create a shorcut in your desktop
Go to cd /usr/local/bin (or cd /usr/bin) and do:
sudo ln -s /path/to/eclipse where eclipse is the binary that you are used to launch.
/usr/local/bin and /usr/bin directories should already be in your PATH, so you don't need to modify ~/.bashrc.
does anyone know how to install SlamData on linux? I've download the file on my machine, and double click it, but it opens a green screen and nothing happens. Thanks.
Download the linux installer file;
add executable permission
chmod +x slamdata_unix_2_1_8.sh
Run the executable and follow instructions;
./slamdata_unix_2_1_8.sh
After installation, To start SlamData, cd to your installation dir, issue the following command;
./SlamData
For further documentation visit http://slamdata.com/documentation/
im trying to install xampp on "new" linux mint machine.
However im quite a noob to linux since i havnt used it for that long.
When i try to run the file that ive download from the following page:
Xampp download
i get the following error two errors:
Could not display "/home/marc/Downloads/xampp-linux-x64-1.8.3-0-installer.run".
and if i click yes
Installing mime type handlers isn't supported
To search and install software which can open certain file types you have to install app-install-data.
can anyone tell me what the problem is and how i might fix it?
you need to execute the file (e.g. open a terminal, navigate to your Downloads folder and run bash xampp-linux-x64-1.8.3-0-installer.run (possibly it might need to be run otherwise, but thats my best guess)).
alternatively you might be presented to run/execute the file (instead of displaying it). if so, choose this option.
on the other hand, you might consider installing apache/php/mysql via your package manager.
what you can do is that you can use the chmod +x /your folder location/.run file that you want to install
after that you can run following command
./and your .run file name
example:-
in my case :- User#user~$su root
it will ask for password so give it
User#user~chmod +x /Downloads/xampp-linux-x64-1.8.3-0-installer.run
User#user~./xampp-linux-x64-1.8.3-0-installer.run