I have installed meteor, nodejs and MongoDB on ubuntu 14.04. Everyday i find my hard disk space decreasing by almost 1 gig. What may cause that. Initially i had 16 gig and it was full, then i have to increase it by 24gig to make it 40gig. now in 3 days after the upgrade that hard disk is now 21 gig. The server is an instance EC2 on Amazon
A easy way to find out where all your space is being use is:
sudo du -h -d 1 <location>
Example:
sudo df -h -d 1 /
Output:
759M /usr
15M /home
6.9M /run
6.4M /bin
16K /lost+found
4.0K /mnt
1.5G /
This will get you output of your HDD space consumptio
n from your root directory,
just follow the output and run command again by changing the directory see which directory has taken up all the space.
UPDATE:
As you said docker is taking up space on your server see this
Related
when i'm writing df -h in my instance i'm getting this data:
Filesystem Size Used Avail Use% Mounted on
devtmpfs 7.7G 0 7.7G 0% /dev
tmpfs 7.7G 0 7.7G 0% /dev/shm
tmpfs 7.7G 408K 7.7G 1% /run
tmpfs 7.7G 0 7.7G 0% /sys/fs/cgroup
/dev/nvme0n1p1 32G 24G 8.5G 74% /
tmpfs 1.6G 0 1.6G 0% /run/user/1000
but when i'm clicking sudo du -sh / i'm getting:
11G /
So in df -h, / size is 24G but in du -sh same directory the size is 11G.
I'm trying to get some free space on my instance and can't find the files that cause that.
What i'm missing?
did df -h is really giving fake data?
This question comes up quite often. The file system allocates disk blocks in the file system to record its data. This data is referred to as metadata which is not visible to most user-level programs (such as du). Examples of metadata are inodes, disk maps, indirect blocks, and superblocks.
The du command is a user-level program that isn't aware of filesystem metadata, while df looks at the filesystem disk allocation maps and is aware of file system metadata. df obtains true filesystem statistics, whereas du sees only a partial picture.
There are many causes on why the disk space used or available when running the du or df commands differs.
Perhaps the most common is deleted files. Files that have been deleted may still be open by at least one process. The entry for such files is removed from the associated directory, which makes the file inaccessible. Therefore the command du which only counts files does not take these files into account and comes up with a smaller value. As long as a process still has the deleted file in use, however, the associated blocks are not yet released in the file system, so df which works at the kernel level correctly displays these as occupied. You can find out if this is the case by running the following:
lsof | grep '(deleted)'
The fix for this issue would be to restart the services that still have those deleted files open.
The second most common cause is if you have a partition or drive mounted on top of a directory with the same name. For example, if you have a directory under / called backup which contains data and then you mount a new drive on top of that directory and label it /backup but it contains no data then the space used will show up with the df command even though the du command shows no files.
To determine if there are any files or directories hidden under an active mount point, you can try using a bind-mount to mount your / filesystem which will enable me to inspect underneath other mount points. Note, this is recommended only for experienced system administrators.
mkdir /tmp/tmpmnt
mount -o bind //tmp/tmpmnt
du /tmp/tmpmnt
After you have confirmed that this is the issue, the bind mount can be removed by running:
umount /tmp/tmpmnt/
rmdir /tmp/tmpmnt
Another possible cause might be filesystem corruption. If this is suspected, please make sure you have good backups, and at your convenience, please unmount the filesystem and run fsck.
Again, this should be done by experienced system administrators.
You can also check the calculation by running:
strace -e statfs df /
This will give you output similar to:
statfs("/", {f_type=XFS_SB_MAGIC, f_bsize=4096, f_blocks=20968699, f_bfree=17420469,
f_bavail=17420469, f_files=41942464, f_ffree=41509188, f_fsid={val=[64769, 0]},
f_namelen=255, f_frsize=4096, f_flags=ST_VALID|ST_RELATIME}) = 0
Filesystem 1K-blocks Used Available Use% Mounted on
/dev/vda1 83874796 14192920 69681876 17% /
+++ exited with 0 +++
Notice the difference between f_bfree and f_bavail? These are the free blocks in the filesystem vs free blocks available to an unprivileged user. The used column is merely a calculation between the two.
Hope this will make your idea clear. Let me know if you still have any doubts.
I have created a Linux vm on FreeNAS with an HDD size of 300GB but
In system Info it's showing 50GB in rootfs
here is the screenshot
enter image description here
How can i increase the 50GB to higher?
Thanks for informing.
As the question here I will post the solution if anyone is looking it
This requires you to be able to ssh into the instance using the root user account and that no services be running as users out of /home on the target machine.
The examples are from a default installation with no customation-you NEED to know what you're working with for volumes/partitions to not horribly break things.
By default, CentOS 7 uses XFS for the file system and Logical Volume Manager (LVM), creating 3 partitions: /,/home and
Step 1 - Copy /home Contents
To backup the contents of /home, do the following:
mkdir /temp
cp -a /home /temp/
Once that is finished at your back at the prompt, you can proceed to step 2.
Step 2 - Unmount the /home directory
umount -fl /home
Step 3 - Note the size of the home LVM volume
We run the lvs command to display the attributes of the LVM volumes
lvs
Sample output:
LV VG Attr LSize Pool Origin Data% Meta% Move Log Cpy%Sync Convert
home cl -wi-a----- 406.94g
root cl -wi-ao---- 50.00g
swap cl -wi-ao---- 7.81g
Step 4 - Remove the home LVM volume
lvremove /dev/cl/home
Step 5 - Resize the root LVM volume
Based on the output of lvs above, I can safely extend the root LVM by 406GiB.
lvextend -L+406G /dev/cl/root
Step 6 - Resize the root partition
xfs_growfs /dev/mapper/cl-root
Step 7 - Copy the /home contents back into the /home directory
cp -a /temp/home /
Step 8 - Remove the temporary location
rm -rf /temp
Step 9 - Remove the entry from /etc/fstab
Using your preferred text editor, ensure you open /etc/fstab and remove the line for
Step 10 - Don't miss this!
Run the following command to sync systemd up with the changes.
dracut --regenerate-all --force
Credit : troyfontaine(github)
Source : https://gist.github.com/troyfontaine/87091bd6a5c68f45dd62ced3d12bc377
We have a few datasets of small images, where each image is about 100KB, and there about 50K images per dataset (around 5GB each dataset). We typically use these datasets to batch-load each image incrementally into a memory of a Google VM instance in order to perform machine learning studies. This is done several times a day.
Currently, a few of us each have our own Google Persistent Disk attached to the VM with the datasets replicated on each. This is not ideal since they are pricey, however, data access is very fast which allows us to iterate on our studies fairly rapidly. We don't share one disk because of the inconvenience of having to manage read/write settings with Google disks when sharing.
Is there an alternative Google Cloud option to handle this use case? Google Buckets are too slow since it is reading many small files.
If your main interest is having rapid I/O your best bet is using an SSD for obvious reasons. Why I don't understand is why you don't want to share one disk. You can have one SSD attached to one of your instances as R/W for loading and modifying your datasets and mounting it read-only to the instances that need to fetch the data.
I'm not sure how faster will be this solution compared to using a bucket, though. I guess you are aware that gsutil has an option for multithreading transfers, which exponentially increases the data transfer speed, specially when transfering a lot of small files? The flag is -m
-m Causes supported operations (acl ch, acl set, cp, mv, rm, rsync,
and setmeta) to run in parallel. This can significantly improve
performance if you are performing operations on a large number of
files over a reasonably fast network connection.
gsutil performs the specified operation using a combination of
multi-threading and multi-processing, using a number of threads
and processors determined by the parallel_thread_count and
parallel_process_count values set in the boto configuration
file. You might want to experiment with these values, as the
best values can vary based on a number of factors, including
network speed, number of CPUs, and available memory.
Using the -m option may make your performance worse if you
are using a slower network, such as the typical network speeds
offered by non-business home network plans. It can also make
your performance worse for cases that perform all operations
locally (e.g., gsutil rsync, where both source and destination
URLs are on the local disk), because it can "thrash" your local
disk.
If a download or upload operation using parallel transfer fails
before the entire transfer is complete (e.g. failing after 300 of
1000 files have been transferred), you will need to restart the
entire transfer.
Also, although most commands will normally fail upon encountering
an error when the -m flag is disabled, all commands will
continue to try all operations when -m is enabled with multiple
threads or processes, and the number of failed operations (if any)
will be reported at the end of the command's execution.
If you want to go with the instance with R/W SSD and multiple read only clients see below:
One option is to set up an NFS on your SSD, one instance will act as the NFS server with R/W rights and the rest will have only read permissions. I will be using Ubuntu 16.04 but the process is similar in all distros:
1 - Install the required packages on both server and clients:
Server: sudo apt install nfs-kernel-server
Client: sudo apt install nfs-common
2 - Mount the disk SSD disk on the server (after formatting it to the filesystem you want to use):
Server:
jordim#instance-5:~$ lsblk
NAME MAJ:MIN RM SIZE RO TYPE MOUNTPOINT
sdb 8:16 0 50G 0 disk <--- My extra SSD disk
sda 8:0 0 10G 0 disk
└─sda1 8:1 0 10G 0 part /
jordim#instance-5:~$ sudo fdisk /dev/sdb
(I will create a single primary ext4 partition)
jordim#instance-5:~$ sudo fdisk /dev/sdb
(create partition)
jordim#instance-5:~$ lsblk
NAME MAJ:MIN RM SIZE RO TYPE MOUNTPOINT
sdb 8:16 0 50G 0 disk
└─sdb1 8:17 0 50G 0 part <- Newly created partition
sda 8:0 0 10G 0 disk
└─sda1 8:1 0 10G 0 part /
jordim#instance-5:~$ sudo mkfs.ext4 /dev/sdb1
(...)
jordim#instance-5:~$ sudo mkdir /mount
jordim#instance-5:~$ sudo mount /dev/sdb1 /mount/
Make a dir for your NFS share folder:
jordim#instance-5:/mount$ sudo mkdir shared
Now configure the exports on your server. Add the folder to share and the private IPs of the clients. Also you can tweak permissions here, use "ro" for "read only" or "rw" for read-write permissions.
jordim#instance-5:/mount$ sudo vim /etc/exports
(inside the exports file, note the IP is the private IP of the client instance):
/mount/share 10.142.0.5(ro,sync,no_subtree_check)
Now start the nfs service on the server:
root#instance-5:/mount# systemctl start nfs-server
Now to create the mountpoint on the client:
jordim#instance-4:~$ sudo mkdir -p /nfs/share
And mount the folder:
jordim#instance-4:~$ sudo mount 10.142.0.6:/mount/share /nfs/share
Now let's test it:
Server:
jordim#instance-5:/mount/share$ touch test
Client:
jordim#instance-4:/nfs/share$ ls
test
Also, see the mounts:
jordim#instance-4:/nfs/share$ df -h
Filesystem Size Used Avail Use% Mounted on
udev 1.8G 0 1.8G 0% /dev
tmpfs 370M 9.9M 360M 3% /run
/dev/sda1 9.7G 1.5G 8.2G 16% /
tmpfs 1.9G 0 1.9G 0% /dev/shm
tmpfs 5.0M 0 5.0M 0% /run/lock
tmpfs 1.9G 0 1.9G 0% /sys/fs/cgroup
tmpfs 370M 0 370M 0% /run/user/1001
10.142.0.6:/mount/share 50G 52M 47G 1% /nfs/share
There you go, now you have only one instance with a r/w disk and as many clients as you want with read only permissions.
I would like to make a backup of the entire HDD disk.
Step-by-step what I'am trying to do:
1) Check storage capacity (that is going to be backupped):
df -h
Filesystem Size Used Avail Use% Mounted on
/dev/sda1 455G 157G 275G 37% /
2) Mount extra, empty hdd to /mnt/backup/
/dev/sdb 294G 63M 279G 1% /mnt/backup
3) Run backup (using lzop as the fastest compressor)
dd if=/dev/sda1 bs=4M conv=noerror iflag=noatime,nofollow | lzop -1 > /mnt/backup/dev-sda1.lzo
But the backup fails with error: lzop: No space left on device: <stdout>
The extra hdd being fulled with dev-sda1.lzo. But the original size of /dev/sda1 "157G" is obviously less than available on /dev/sdb "279G". Even without compression.
In /etc/fstab /dev/sda1 being mounted to "/":
UUID=8a49b90e-6115-43a6-9702-7620182bbbf5 / ext4 errors=remount-ro 0 1
Is it possible that "dd" is doing recursive copy of the "/mnt/backup/" folder and this leads to it fail ?
Please, advice
Thanks to Mark Setchell to show me the correct direction.
Finally the solution to create dump of the whole partition without spaces is:
dump -0a -z1 -f /mnt/hdd1/dev-sda1.dump.gz /dev/sda1
For 157 G partition of Ubuntu 14.04 + development files + database files "dump" takes 45 minutes (on 7200 rpm HDD) and the result file was 80 G (compression level = 1).
I have a vps slice running centos 5.5 I am supposed to have 15 gigs of disk space, but according to df it seems to double my disk space usage.
when I run du -skh * in / as root i get:
[root#yardvps1 /]# du -skh *
0 aquota.group
0 aquota.user
5.2M bin
4.0K boot
4.0K dev
4.9M etc
2.5G home
12M lib
14M lib64
4.0K media
4.0K mnt
299M opt
0 proc
692K root
23M sbin
4.0K selinux
4.0K srv
0 sys
48K tmp
2.0G usr
121M var
this is consistent with what I have uploaded to the machine, and adds up to about 5gigs.
BUT when i run df i get:
[root#yardvps1 /]# df
Filesystem 1K-blocks Used Available Use% Mounted on
/dev/simfs 15728640 11659048 4069592 75% /
none 262144 4 262140 1% /dev
it is showing me using almost 12 gigs already.
what is causing this discrepancy and is there anything I can do about it, I planned the server out based on 15 gigs but now it is basically only letting me have about 7 gigs of stuff on it.
thanks.
The most common cause of this effect is open files that have been deleted.
The kernel will only free the disk blocks of a deleted file if it is not in use at the time of its deletion. Otherwise that is deferred until the file is closed, or the system is rebooted.
A common Unix-world trick to ensure that no temporary files are left around is the following:
A process creates and opens a temporary file
While still holding the open file descriptor, the process unlinks (i.e. deletes) the file
The process reads and writes to the file normally using the file descriptor
The process closes the file descriptor when it's done, and the kernel frees the space
If the process (or the system) terminates unexpectedly, the temporary file is already deleted and no clean-up is necessary.
As a bonus, deleting the file reduces the chances of naming collisions when creating temporary files and it also provides an additional layer of obscurity over the running processes - for anyone but the root user, that is.
This behaviour ensures that processes don't have to deal with files that are suddenly pulled from under their feet, and also that processes don't have to consult each other in order to delete a file. It is unexpected behaviour for those coming from Windows systems, though, since there you are not normally allowed to delete a file that is in use.
The lsof command, when run as root, will show all open files and it will specifically indicate deleted files that are deleted:
# lsof 2>/dev/null | grep deleted
bootlogd 2024 root 1w REG 9,3 58 917506 /tmp/init.0W2ARi (deleted)
bootlogd 2024 root 2w REG 9,3 58 917506 /tmp/init.0W2ARi (deleted)
Stopping and restarting the guilty processes, or just rebooting the server should solve this issue.
Deleted files could also be held open by the kernel if, for example, it's a mounted filesystem image. In this case unmounting the filesystem or rebooting the server should do the trick.
In your case, judging by the size of the "missing" space I'd look for any references to the file that you used to set up the VPS e.g. the Centos DVD image that you deleted after installing.
Another case which I've come across although it doesn't appear to be your issue is if you mount a partition "on top" of existing files.
If you do so you effectively hide existing files that exist in the directory on the mounted-to partition (the mount point) from the mounted partition.
To fix: stop any processes with open files on the mounted partition, unmount partition, find and move/remove any files that now appear in mount point directory.
I had the same trouble with FreeBSD server. The reboot helped.