Let's say I have the following subdirectories
./a/, ./b/, ./c/, ...
That is, in my current working directory are these subdirectories a/, b/ and c/, and in each of these subdirectories are files. In directory a/ is the file a.in, in directory b/ is the file b.in and so forth.
I now want to copy each .in file to a .out file, that is, a.in to a.out and b.in to b.out, and I want them to reside in the directories they were copied from. So a.out will be found in directory a/.
I've tried various different approaches, such as
find ./ -name '*.in'|cp * *.out
which doesn't work because it thinks *.out is a directory. Also tried
ls -d */ | cd; cp *.in *.out
but it that would list the subdirectories, go into each one of them, but won't let cp do it's work (which still doesn't work)
The
find ./ -name '*.in'
command works fine. Is there a way to pipe arguments to an assignment operator? E.g.
find ./ -name '*.in'| assign filename=|cp filename filename.out
where assign filename= gives filename the value of each .in file. In fact, it would be even better if the assignment could get rid of the .in file extension, then instead of getting a.in.out we would get the preferred a.out
Thank you for your time.
Let the shell help you out:
find . -name '*.in' | while read old; do
new=${old%.in}.out # strips the .in and adds .out
cp "$old" "$new"
done
I just took the find command you said works and let bash read its output one filename at a time. So the bash while loop gets the filenames one at a time, does a little substitution, and a straight copy. Nice and easy (but not tested!).
Try a for loop:
for f in */*.in; do
cp $f ${f%.in}.out;
done
The glob should catch all the files one directory down that have a .in extension. In the cp command, it strips off the .in suffix and then appends a .out (see Variable Mangling in Bash with String Operators)
Alternatively, if you want to recurse into every subdirectory (not just 1 level deep) replace the glob with a find:
for f in $(find . -name '*.in'); do
cp $f ${f%.in}.out;
done
This should do the trick!
for f in `find . -type f -name "*.in"`; do cp $f `echo $f | sed 's/in$/out/g'`; done
Related
I have the following structure:
FolderA
Sub1
Sub2
filexx.csv
filexx.doc
FolderB
Sub1
Sub2
fileyy.csv
fileyy.doc
I want to write a script that will move the .csv files into the folder sub1 for each parent directory (Folder A, Folder B and so on) giving me the following structure:
FolderA
Sub1
filexx.csv
Sub2
filexx.doc
FolderB
Sub1
fileyy.csv
Sub2
fileyy.doc
This is what I have till now but I get the error mv: cannot stat *.csv: No such file or directory
for f in */*/*.csv; do
mv -v "$f" */*/Sub1;
done
for f in */*/*.doc; do
mv -v "$f" */*/Sub2;
done
I am new to bash scripting so please forgive me if I have made a very obvious mistake. I know I can do this in Python as well but it will be lengthier which is why I would like a solution using linux commands.
find . -name "*.csv" -type f -execdir mv '{}' Sub1/ \;
Using find, search for all files with the extension .csv and then when we find them, execute a move command from within the directory containing the files, moving the files to directory Sub1
find . -name "*.doc" -type f -execdir mv '{}' Sub2/ \;
Follow the same principle for files with the extension .doc but this time, move the files to Sub2.
I believe you are getting this error because no file matched your wildcard. When it happens, the for loop will give $f the value of the wildcard itself. You are basically trying to move the file *.csv which does not exist.
To prevent this behavior, you can add shopt -s nullglob at the top of your script. When using this, if no file is found, your script won't enter the loop.
My advise is, make sure you run your script from the correct location when using wildcards like this. But maybe what you meant to do by writing */*/*.csv is to recursively match all the csv files. If that's what you intended to do, this is not the right way to do it.
To recursively match all csv/doc/etc files using native bash you can add shopt -s globstar to the top of your script and use **/*.csv as wildcard
#!/bin/bash
shopt -s globstar nullglob
for f in **/*.csv; do
mv "$f" Destination/ # Note that $f is surrounded by "" to handle whitespaces in filenames
done
You could also use the find (1) utility to achieve that. But if you're planning to do more processing on the files than just moving them, a for loop might be cleaner as you won't have to inline everything in the same command.
Side note : "Linux commands" as you say are actually not Linux commands, they are part of the GNU utilities (https://www.gnu.org/gnu/linux-and-gnu.en.html)
If csv files you want to move are in the top directories (from the point of view of the current directory), but not in the subdirectories of them, then simply:
#!/bin/bash
for dir in */; do
mv -v "$dir"*.csv "${dir}Sub1/"
mv -v "$dir"*.doc "${dir}Sub2/"
done
If the files in all subdirectories are wanted to be moved similarly, then:
shopt -s globstar
for file in **/*.csv; do
mv -v "$file" "${file%/*}/Sub1/"
done
for file in **/*.doc; do
mv -v "$file" "${file%/*}/Sub2/"
done
Note that, the directories Sub1 and Sub2 are relative to the directory where csv and doc files reside.
I'm trying to match two directories and if the file exists in the second directory, I want to move files from the first directory to a third one.
The filenames do not matching exactly, they get a "_ica" at the end of the name and a different extension.
I have tried to write a script that loops through dir1 checks if it's in dir2
and if found move to dir3:
DATA= /home/eegfilesonlyWM/*
PROCESSED= /home/eegfilesonlyWM/icaddata/*
DONE= /home/eegfilesonlyWM/done/
for f in $DATA ; do
fname=${f##*/}
fname=${fname%/}
find /home/eegfilesonlyWM/icaddata/ -iname "${fname*_ica*}" -type f -exec mv {} ./done \;
done
I would like to copy from the first directory those files that already have corresponding files in the second directory.
Thank you for any help
Maybe this will do what you want:
#!/usr/bin/env bash
#Directory paths here
DATA=./DATA
PROCESSED=./PROCESSED
DONE=./DONE
#Do the test and copy here
for f in `ls -1 $DATA`; do
#build output name
p="$PROCESSED/${f/\.xxx/}"; #xxx is the file extension of original
p="${p}_ica.yyy"; #yyy is the file extension of the processed
if [ -f $p ] ; then
cp $DATA/$f $DONE
fi
done
What I am trying to basically do with this shell script is to have the user input a directory via console and have the output be all of the .c files that are inside that directory and the sub-directories within it (the files are copied to the current location of the script).
rsync -va --include "*/" --include '*.c' --exclude '*' "$1/" .
However when I run the script (sh test.sh DirA) it copies all of the sub-directories within the $1 directory, with nothing inside them (not even the .c files). I want the output to not be the directories, but instead ONLY the .c files.
So if I were to ls in the current directory it should come out with a bunch of files like: file.c file1.c file2.c NOT dir1 dir2 dir3.
You should simply leave out --exclude '*'. As it occurs later on the command line, it is applied after a candidate file succeded the --include '*.c' test and causes any file to be rejected.
So, for simply copying any .c file within the given subtree to a hierarchy at current directory use a plain:
rsync -va --include '*.c' "$1" .
EDIT:
As rsync is all about copying and synchronizing hierarchies, it is the wrong tool for flattening hierarchies into a single directory. For such an operation you will need a command that is explicitly ignoring the source path for the target side (like plain cp).
E.g. in your case you could use:
find "$1" -name '*.c' -print0 | xargs -0 -I'{}' cp {} .
I want to copy recursively files to its parent folder for a specific file extension. For example:
./folderA/folder1/*.txt to ./folderA/*.txt
./folderB/folder2/*.txt to ./folderB/*.txt
etc.
I checked cp and find commands but couldn't get it working.
I suspect that while you say copy, you actually mean to move the files up to their respective parent directories. It can be done easily using find:
$ find . -name '*.txt' -type f -execdir mv -n '{}' ../ \;
The above command recurses into the current directory . and then applies the following cascade of conditionals to each item found:
-name '*.txt' will filter out only files that have the .txt extension
-type f will filter out only regular files (eg, not directories that – for whatever reason – happen to have a name ending in .txt)
-execdir mv -n '{}' ../ \; executes the command mv -n '{}' ../ in the containing directory where the {} is a placeholder for the matched file's name and the single quotes are needed to stop the shell from interpreting the curly braces. The ; terminates the command and again has to be escaped from the shell interpreting it.
I have passed the -n flag to the mv program to avoid accidentally overwriting an existing file.
The above command will transform the following file system tree
dir1/
dir11/
file3.txt
file4.txt
dir12/
file2.txt
dir2/
dir21/
file6.dat
dir22/
dir221/
dir221/file8.txt
file7.txt
file5.txt
dir3/
file9.dat
file1.txt
into this one:
dir1/
dir11/
dir12/
file3.txt
file4.txt
dir2/
dir21/
file6.dat
dir22/
dir221/
file8.txt
file7.txt
dir3/
file9.dat
file2.txt
file5.txt
To get rid of the empty directories, run
$ find . -type d -empty -delete
Again, this command will traverse the current directory . and then apply the following:
-type d this time filters out only directories
-empty filters out only those that are empty
-delete deletes them.
Fine print: -execdir is not specified by POSIX, though major implementations (at least the GNU and BSD one) support it. If you need strict POSIX compliance, you'll have to make do with the less safe -exec which would need additional thought to be applied correctly in this case.
Finally, please try your commands in a test directory with dummy files, not your actual data. Especially with the -delete option of find, you can loose all your data quicker than you might imaging. Read the man page and, if that is not enough, the reference manual of find. Never blindly copy shell commands from random strangers posted on the internet if you don't understand them.
$cp ./folderA/folder1/*.txt ./folderA
Try this commnad
Run something like this from the root(ish) directory:
#! /bin/bash
BASE_DIR=./
new_dir() {
LOC_DIR=`pwd`
for i in "${LOC_DIR}"/*; do
[[ -f "${i}" ]] && cp "${i}" ../
[[ -d "${i}" ]] && cd "${i}" && new_dir
cd ..
done
return 0
}
new_dir
This will search each directory. When a file is encountered, it copies the file up a directory. When a directory is found, it will move down into the directory and start the process over again. I think it'll work for you.
Good luck.
I have a folder with more than 5000 images, all with JPG extension.
What i want to do, is to add recursively the "thumb_" prefix to all images.
I found a similar question: Rename Files and Directories (Add Prefix) but i only want to add the prefix to files with the JPG extension.
One of possibly solutions:
find . -name '*.jpg' -printf "'%p' '%h/thumb_%f'\n" | xargs -n2 echo mv
Principe: find all needed files, and prepare arguments for the standard mv command.
Notes:
arguments for the mv are surrounded by ' for allowing spaces in filenames.
The drawback is: this will not works with filenames what are containing ' apostrophe itself, like many mp3 files. If you need moving more strange filenames check bellow.
the above command is for dry run (only shows the mv commands with args). For real work remove the echo pretending mv.
ANY filename renaming. In the shell you need a delimiter. The problem is, than the filename (stored in a shell variable) usually can contain the delimiter itself, so:
mv $file $newfile #will fail, if the filename contains space, TAB or newline
mv "$file" "$newfile" #will fail, if the any of the filenames contains "
the correct solution are either:
prepare a filename with a proper escaping
use a scripting language what easuly understands ANY filename
Preparing the correct escaping in bash is possible with it's internal printf and %q formatting directive = print quoted. But this solution is long and boring.
IMHO, the easiest way is using perl and zero padded print0, like next.
find . -name \*.jpg -print0 | perl -MFile::Basename -0nle 'rename $_, dirname($_)."/thumb_".basename($_)'
The above using perl's power to mungle the filenames and finally renames the files.
Beware of filenames with spaces in (the for ... in ... expression trips over those), and be aware that the result of a find . ... will always start with ./ (and hence try to give you names like thumb_./file.JPG which isn't quite correct).
This is therefore not a trivial thing to get right under all circumstances. The expression I've found to work correctly (with spaces, subdirs and all that) is:
find . -iname \*.JPG -exec bash -c 'mv "$1" "`echo $1 | sed \"s/\(.*\)\//\1\/thumb/\"`"' -- '{}' \;
Even that can fall foul of certain names (with quotes in) ...
In OS X 10.8.5, find does not have the -printf option. The port that contained rename seemed to depend upon a WebkitGTK development package that was taking hours to install.
This one line, recursive file rename script worked for me:
find . -iname "*.jpg" -print | while read name; do cur_dir=$(dirname "$name"); cur_file=$(basename "$name"); mv "$name" "$cur_dir/thumb_$cur_file"; done
I was actually renaming CakePHP view files with an 'admin_' prefix, to move them all to an admin section.
You can use that same answer, just use *.jpg, instead of just *.
for file in *.JPG; do mv $file thumb_$file; done
if it's multiple directory levels under the current one:
for file in $(find . -name '*.JPG'); do mv $file $(dirname $file)/thumb_$(basename $file); done
proof:
jcomeau#intrepid:/tmp$ mkdir test test/a test/a/b test/a/b/c
jcomeau#intrepid:/tmp$ touch test/a/A.JPG test/a/b/B.JPG test/a/b/c/C.JPG
jcomeau#intrepid:/tmp$ cd test
jcomeau#intrepid:/tmp/test$ for file in $(find . -name '*.JPG'); do mv $file $(dirname $file)/thumb_$(basename $file); done
jcomeau#intrepid:/tmp/test$ find .
.
./a
./a/b
./a/b/thumb_B.JPG
./a/b/c
./a/b/c/thumb_C.JPG
./a/thumb_A.JPG
jcomeau#intrepid:/tmp/test$
Use rename for this:
rename 's/(\w{1})\.JPG$/thumb_$1\.JPG/' `find . -type f -name *.JPG`
For only jpg files in current folder
for f in `ls *.jpg` ; do mv "$f" "PRE_$f" ; done